Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I09
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    29   1.5  
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     29   2.0  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    27   6.1  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    27   6.1  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    27   8.0  

>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/79 (21%), Positives = 27/79 (34%)
 Frame = +2

Query: 239 CNYGCHKIRTNHRYRIVGFVDNTYTGYRPNYRRTYTPNQNDGDECEISDIDEICTHVCGN 418
           CN  C+   +N   +        Y        + Y P  N+      ++    C   C N
Sbjct: 214 CNSACNSQCSNICQQTAQATQQVYNQNSNTNTQMYNPYNNNNQGSGSANCAPACQPACDN 273

Query: 419 ACTESC*ASSGSPLQAVTA 475
           +CT    A   +P  A T+
Sbjct: 274 SCTSQTPAPMYNPYDASTS 292


>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +1

Query: 235 RMQLWLSQNTNKPQIQNCRIRRQHLHRISTQLQ 333
           R++LW+++   + + QN R+R Q+L R +TQLQ
Sbjct: 23  RIRLWVTKRMKELEDQNERLRAQNL-RCTTQLQ 54


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 347 PNQNDGDECEISDIDEICTHVCGNACTESC*ASSGS 454
           P  N+ ++C+   I    T +C  +C   C +S G+
Sbjct: 100 PQTNNCNQCQQQCISSCATPICAQSCNNQCSSSCGN 135


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +1

Query: 235 RMQLWLSQNTNKPQIQNCRIRRQHLHRISTQLQ 333
           R++LW+++   + + QN R+R Q+L R +TQLQ
Sbjct: 23  RIRLWVTKRMKELEDQNERLRAQNL-RCTTQLQ 54


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 368 ECEISDIDEICTHVCGNACTESC*ASSGSPLQAVT 472
           +C  ++I+  C+  C  AC  SC  S+G+     T
Sbjct: 65  QCPRAEINSDCSATCVRACIPSCSKSTGNTFACST 99


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 88  HVPRILMYQYKQLTCTDEMKERLAPAS 8
           H+P+   YQY  L  TDE      P+S
Sbjct: 183 HIPQPFDYQYTDLLSTDEQNSSAIPSS 209


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
            protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 488  ECGFRQ*QPEVGFLSSLSRIPYMRYHRRVCISHRYH 381
            E GFR   P +GFL+ L +I  + Y +     H  H
Sbjct: 1133 EYGFRIFNPSIGFLAGLMKIAALNYPKSGLDKHFEH 1168


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = +2

Query: 350 NQNDGDECEISDIDEICTHVCGNACTESC*ASSGSPLQAVTA*NRIHIRFC 502
           N   GD CE+ DI        G  CT+ C           T  NRI    C
Sbjct: 506 NNTTGDHCELCDIGFYGDPTMGRGCTK-CPCPKNGECSYNTVTNRIECNDC 555


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 362 GDECEISDIDEICTHVCGNACTE 430
           GD+C+ SDI    T + G  CTE
Sbjct: 330 GDKCQYSDICTSATCLYGGTCTE 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,859,203
Number of Sequences: 27780
Number of extensions: 242486
Number of successful extensions: 680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)