Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I09
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    29   1.9  
At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) ...    29   2.5  
At4g13750.1 68417.m02134 expressed protein                             28   3.3  
At1g74150.1 68414.m08588 kelch repeat-containing protein low sim...    27   5.7  
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    27   7.6  
At5g24740.1 68418.m02920 expressed protein                             27   7.6  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    27   7.6  

>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 353 QNDGDECEISDIDEICTHVCGNACTESC*ASSGSPLQAVT 472
           Q+   E   S  D   TH     CT +C ++  SP  +VT
Sbjct: 625 QSSSSESSSSSSDSSSTHSTTTTCTSTCTSTDASPAPSVT 664


>At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) low
           similarity to SP|Q56239 DNA mismatch repair protein mutS
           {Thermus aquaticus}; contains Pfam profiles PF05190:
           MutS family domain IV, PF01624: MutS domain I, PF01541:
           Endo/excinuclease amino terminal domain
          Length = 1118

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 60  YWYIRIRGTCQTLTRAIPAIILLTANNNRVKMSLPRPVVILGQLWL--LIAIGQSAAMPT 233
           YW+    GT    T  + ++ LLT  N   K SL R +     L +  L+   +SA +P 
Sbjct: 744 YWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPH 803

Query: 234 EDATMVVTK 260
            D+ M+  K
Sbjct: 804 FDSIMLHMK 812


>At4g13750.1 68417.m02134 expressed protein
          Length = 2137

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 408  SVVTHVRNPAKRAQEAHFRLLL 473
            +++T  RNP K  QE H RLL+
Sbjct: 2103 AILTQHRNPVKLCQEGHLRLLV 2124


>At1g74150.1 68414.m08588 kelch repeat-containing protein low
           similarity to rngB protein, Dictyostelium discoideum,
           PIR:S68824; contains Pfam profile PF01344: Kelch motif
          Length = 552

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 396 YAHTSVVTHVRNPAKRAQEAHFRLLLPETAFISG 497
           Y+HT +   +R    R +EAH   L+ +  FI G
Sbjct: 108 YSHTWIRPDIRGEGPRVREAHSAALVDKRLFIFG 141


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -3

Query: 446 SSLSRIPYMRYH----RRVCISHRYH*FHIHLRHFDWGYMFFCSWVD 318
           +S++ +P   +H    RR+C+S   +   I    FD G+MF   W++
Sbjct: 829 TSIAELPCSIFHLSSLRRLCLSRNDN---IRTLRFDMGHMFHLKWLE 872


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 244  LWLSQNTNKPQIQNCRIRRQHLHRISTQLQKNI 342
            LW   +T+  Q+ N R+R++ L    +QL+ +I
Sbjct: 994  LWKQSSTDVSQVLNLRVRKRGLEPSGSQLEVSI 1026


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 247 IVASSVGIAAD*PMAINSHNWPSITTGLGSDILTLL 140
           +VA+      D P + +SH W  I  G+G+ +L LL
Sbjct: 258 VVATPPQTPVDPPGSSSSHKWIYIGIGIGAGLLLLL 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,208
Number of Sequences: 28952
Number of extensions: 220893
Number of successful extensions: 573
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)