Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I08
         (569 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.79 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    22   4.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 478  SGDYTCVVSTFMDEDSKTKQMTVFVP 555
            +G+Y+C V     +DS T Q+ V  P
Sbjct: 1371 AGEYSCHVENDYGQDSVTHQLIVNAP 1396



 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 448 LRIIKTNTDISGDYTCVVSTFMDEDSKTKQMTVFVP 555
           L I +   + SG Y CVV+  +  +S    +TV  P
Sbjct: 292 LIIREAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 327



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 481 GDYTCVVSTFMDEDSKTKQMTVFVP 555
           G+YTC+ S      + T  + + VP
Sbjct: 674 GNYTCLASNSASVTTYTTSLFINVP 698


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 151 LCTILLLVTCFHVIRGVKITKMVVPEII 234
           L T+ L++TC HV   V + + V+P+ I
Sbjct: 2   LFTVFLVLTCAHV---VFLEEYVIPDNI 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,868
Number of Sequences: 336
Number of extensions: 3175
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)