Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I08
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245...    29   2.6  
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    28   4.6  
03_01_0083 - 667530-667837,668092-668224                               28   4.6  
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    27   8.0  

>02_05_1264 +
           35321972-35322448,35323022-35323252,35323903-35324565,
           35324698-35324806,35324965-35325383
          Length = 632

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 356 TIH*YTNLDFDLKNHFTTRPDVSLLKV*SQSNITASSTPYWIISGTTIFVI 204
           T H   N DF+L   FT   DVS   +  + +   S+TP  + SG  +F +
Sbjct: 564 TEHLQKNGDFNLLLSFTVEGDVSTKSIGFEPDTQMSTTPMVLRSGMYLFFV 614


>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 382 ILRGRVDLTYRASSDPLKMHRALRIIKTNTDISGDYTCV 498
           I+   + LT   S +PL M RALR  KTN D+  ++  V
Sbjct: 462 IVSDALRLTSGLSWEPLVMWRALREKKTNGDVEDEHFAV 500


>03_01_0083 - 667530-667837,668092-668224
          Length = 146

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 196 HV*HGNR*QAEGLCIDASTTHGQPAFAP 113
           HV HG    A+     AST HG PA++P
Sbjct: 35  HVEHGTTTSADDEYGSASTHHGMPAYSP 62


>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 190 IRGVKITKMVVPEIIQYGVEDAV 258
           I+G  IT++V PE+I+  +ED +
Sbjct: 541 IKGKPITEIVAPEVIKEAIEDEI 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,355
Number of Sequences: 37544
Number of extensions: 306627
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)