Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I08
(569 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.22
SB_50799| Best HMM Match : I-set (HMM E-Value=0) 31 0.66
SB_20351| Best HMM Match : I-set (HMM E-Value=1.9e-13) 30 1.2
SB_427| Best HMM Match : I-set (HMM E-Value=1.8e-12) 30 1.5
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_39368| Best HMM Match : THUMP (HMM E-Value=2.9) 29 2.7
SB_21656| Best HMM Match : C2 (HMM E-Value=0.019) 28 4.7
SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10) 28 4.7
SB_29237| Best HMM Match : I-set (HMM E-Value=0) 28 4.7
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 8.2
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 27 8.2
>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 618
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 159 NPSACHLFPCYTWSQDNKNGSPGNNPIRCRRC 254
NP CH F +D+ +G G P RC +C
Sbjct: 314 NPFKCHNFDVEMSEEDSTDGEHGEKPFRCTQC 345
>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
Length = 1195
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 439 HRALRIIKTNTDISGDYTCVVSTFMDEDSKTKQMTVFVPETKF 567
++ L I +T SG+YTC+ S S KQ+ + VP + F
Sbjct: 492 NKTLVIFQTEYRDSGNYTCIASNRAGNTSLAKQVDIQVPASVF 534
>SB_20351| Best HMM Match : I-set (HMM E-Value=1.9e-13)
Length = 142
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = +1
Query: 358 GQKPQDIGILRGRVDLTYRASSDPLKMHRALRIIKTNTDISGDYTCVVSTFMDEDSKTKQ 537
G P I LRG V L R+S L L +K N SG YTC + + DSK+
Sbjct: 84 GDTPFHIAWLRGDVILQNRSSDTDL----VLSAVKAND--SGIYTCCTTNSLGSDSKSLV 137
Query: 538 MTV 546
+ V
Sbjct: 138 LLV 140
>SB_427| Best HMM Match : I-set (HMM E-Value=1.8e-12)
Length = 89
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +1
Query: 358 GQKPQDIGILRGRVDLTYRASSDPLKMHRALRIIKTNTDISGDYTCVVSTFMDEDSKTKQ 537
G P + LRG V L R+S L L +K N SG YTC + + DSK+
Sbjct: 31 GDTPFHVAWLRGDVILQNRSSDTDL----VLSAVKAND--SGIYTCFTTNTLGSDSKSLV 84
Query: 538 MTV 546
+ V
Sbjct: 85 LLV 87
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 394 RVDLTYRASSDPLKMHRALRIIKTNTDISGDYTCVVSTFM-DEDSKTKQMTVFVPETKF 567
RV + R D + L I T D GDYTC+V + +SKTK + +F
Sbjct: 630 RVKDSRRTKCDLVDGEVKLTIKTTRADDQGDYTCIVRNELGSAESKTKLKVIAFARPEF 688
>SB_39368| Best HMM Match : THUMP (HMM E-Value=2.9)
Length = 165
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 135 CVVDASMHNPSACHLFPCYTWSQDNKNGSPG 227
C+ D PSAC F TW N G G
Sbjct: 133 CIFDEKYKQPSACARFSTKTWGPQNTVGKLG 163
>SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)
Length = 792
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 291 VIVESIIAVQ-YNSIFYTVLDYFRDYHFCYLDSTYNMETGDKQKDCA*MRQRH 136
V+VE I + + S + D F YHF + T + D Q+ C RQ H
Sbjct: 443 VVVEDIRGLSVFRSTVWGETDCFVQYHFPHQTPTNDALEEDTQQRCTGRRQEH 495
>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
Length = 718
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 211 KMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKW 315
K +P+ +Q+G D ++ D+T+N D + +W
Sbjct: 523 KYDIPQDVQFGDIDYMVRQLDFTYNKDNFTRLPEW 557
>SB_29237| Best HMM Match : I-set (HMM E-Value=0)
Length = 869
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 445 ALRIIKTNTDISGDYTCVVSTFMDEDSKTKQMTVFVP 555
ALR KT + SG++TC S + S+T Q+ + P
Sbjct: 370 ALRNNKTAMEDSGNFTCTASNTAGKKSQTVQIIISQP 406
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 160 LCIDASTTHGQPAFAPSHMNHHTTER*IESTVHSPGMT*QKVERS 26
L + +++ QPA + M+H T R + T+HSP +VE +
Sbjct: 70 LATNYNSSWPQPAGNQASMHHSTPGRDVTDTIHSPRADDDEVEEA 114
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 448 LRIIKTNTDISGDYTCVVSTFMDEDSKTKQMTV 546
L I+ T D G+YTC+ + E S T ++ V
Sbjct: 3021 LTIMNTTLDDEGEYTCIAKNKVGEVSCTAELLV 3053
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 445 ALRIIKTNTDISGDYTCVVSTFMDEDSKTKQMTVFVPETK 564
+L IIK + SG+YTC + + + S++ + V P+ K
Sbjct: 2474 SLVIIKVTKEDSGNYTCQAVSSLGKASQSFDLKVEAPKVK 2513
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,385,119
Number of Sequences: 59808
Number of extensions: 386808
Number of successful extensions: 1076
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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