Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I07
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.68 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.1  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.6  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   4.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   4.8  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   4.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   6.3  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    25   8.4  

>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -2

Query: 172 RGSAVRKSVQCS---PPLWGYVQVYNSQMP 92
           +G ++ KS  CS   PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +1

Query: 355  VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDXGEGGFWVSYEDP 531
            V  L+SYP++  ++   + +    +LR++N P +  F  +A   P    E GF+V   D 
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873

Query: 532  DT----AGNKASYVKTKN 573
            +T    A  +AS+   +N
Sbjct: 1874 ETQELFAIRRASFAGRRN 1891


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 230 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 319
           PT L    SA  DVR +S   +   +FH+Y+
Sbjct: 51  PTELKARTSATFDVRSASTSPINASDFHKYS 81


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 313 IHADKGGEAGPYTKVQGLLSY 375
           +H  + G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 148 PIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 300
           P   PQ+ + +QN +  +   +  G P  K V+ +  T        DSDS++S
Sbjct: 777 PESPPQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 84  DNVDQVYDAWDVKVNGAIYVWQ 19
           D VD++YDAW    N     WQ
Sbjct: 54  DYVDEMYDAWKKDPNSVHASWQ 75


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 3/146 (2%)
 Frame = +1

Query: 58   SIINLVDIVNIQAFDYYTPERNPKEAD---YTAPIYAPQNRDPLQNADAAINYWIQNGAP 228
            S I L ++         TPE  P+  D   +    +AP   + LQN   A N    N   
Sbjct: 705  SFIILKELAQKNLARIQTPENVPRLFDLLRFNDQKFAPAFYNVLQNTLVAKNLEQANRIA 764

Query: 229  THKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKLINPN 408
              K    + T      +D    ++G       KGG +   T      S  E C K +   
Sbjct: 765  YGKTRWRVVTLSGQL-IDKSGTMTG-GGTRVKKGGMSSAITSDVSPASV-ETCDKQVQLE 821

Query: 409  QNGKRPHLRKVNDPSKRFGTYAFRLP 486
                R HL ++   ++RF   + R+P
Sbjct: 822  DTRYRQHLSELESLNQRFTEISERIP 847


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 43  YFDVPSIINLVDIVNIQAFDYYTPERNPKEAD 138
           Y D P I+  V  +N+   D  T + NP + D
Sbjct: 68  YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,017
Number of Sequences: 5004
Number of extensions: 55418
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)