Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I07
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       46   2e-05
11_04_0234 + 15187065-15188241,15188316-15188494                       41   7e-04
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507...    29   2.8  
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    29   3.7  
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376           28   6.5  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    28   6.5  
12_02_0292 + 16979550-16980662,16983249-16983731                       27   8.6  
05_03_0191 - 9521496-9521921                                           27   8.6  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
 Frame = +1

Query: 49  DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 219
           D PS  +   +D VN+ AF    P   N     + AP+Y   +R    +A   +  W+  
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271

Query: 220 GAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 384
           G P  K+V+GI   GR+W L + +      P+ A    + G  +   G +SY E+
Sbjct: 272 GVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV 324


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
 Frame = +1

Query: 31  NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW 210
           ++++ + +  + + +D VNI  F  +    N   AD  AP+Y   ++D   +A   +  W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISW 267

Query: 211 IQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 384
           +  G P  KLV+GI   GR+W L + D    G P   A   G     +   G+++Y EI
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYAEI 323


>03_05_1021 -
           29750155-29750220,29750342-29750428,29750614-29750799,
           29750965-29751059,29751179-29751284,29751378-29751452,
           29751548-29751679,29751782-29751961,29752371-29752567,
           29752651-29752906
          Length = 459

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 238 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 393
           LV+G   +  T  L    E+SG+P    D     GP  K+   L++ E+  K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416


>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 173 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 283
           ++Y +PT++ + GF   +    LSLV+A L+  GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329


>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
          Length = 746

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/93 (23%), Positives = 37/93 (39%)
 Frame = +1

Query: 184 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQG 363
           N + +IN+W+     T     G      +  + S   + G     A + G  GP ++   
Sbjct: 508 NGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCD 567

Query: 364 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRF 462
           + SY  +   LI    +G+RP L+    P   F
Sbjct: 568 IYSYGVLLLVLI----SGRRP-LQVTASPMSEF 595


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 590 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 471
           M T P       +A   A  GS  +T  PPSP   GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581


>12_02_0292 + 16979550-16980662,16983249-16983731
          Length = 531

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 231 PQTCPWYQHHWTYVEARFR 287
           P+   W QHHWT    R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523


>05_03_0191 - 9521496-9521921
          Length = 141

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 219 WCAYPQTCPWYQHHWTYVEARFR 287
           W   P+   W++ HWT   AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172,483
Number of Sequences: 37544
Number of extensions: 380747
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)