Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I07
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.43 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.98 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 103 YYTPERNPKEADYTAPIYAPQN 168
           Y+  E++PK+   T P  APQN
Sbjct: 302 YFRAEKDPKKMPCTQPPSAPQN 323


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 199 INYWIQNGAPTHKLVLGIST--TGRTWKLDSDSEISGV 306
           +++WI   A + ++ LGI+T  T  T  LDS +++  V
Sbjct: 264 VSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKV 301


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 199 INYWIQNGAPTHKLVLGIST 258
           +++WI + A + ++ LGI+T
Sbjct: 261 VSFWINHEATSARVALGITT 280


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 506  ASGFLTKILTRPETKLVT*KQRTLAVCPS 592
            ++ F +K++TRP+T       + +AV P+
Sbjct: 1136 STSFDSKVMTRPDTDSENWTPKMMAVEPT 1164


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +1

Query: 199 INYWIQNGAPTHKLVLGIST 258
           +++W+   A   ++ LG++T
Sbjct: 240 VSFWLNRNATPARVALGVTT 259


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +1

Query: 199 INYWIQNGAPTHKLVLGIST 258
           +++W+   A   ++ LG++T
Sbjct: 240 VSFWLNRNATPARVALGVTT 259


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +1

Query: 199 INYWIQNGAPTHKLVLGIST 258
           +++W+   A   ++ LG++T
Sbjct: 179 VSFWLNRNATPARVALGVTT 198


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 193 RRRFVEDRGSAVRKSVQCSPPLWGYVQVY 107
           R+ + EDR   +R+      P +   QVY
Sbjct: 14  RQVYGEDRWEEIRRQASVEQPSFSVHQVY 42


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 277 LDSDSEISGVPPIHADKGGEAGPYTKVQGL 366
           +  D  + G+ P+H   G   GP    +G+
Sbjct: 53  IPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,827
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)