Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I07
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 55 4e-08
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 54 7e-08
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 54 1e-07
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 51 5e-07
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 49 2e-06
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 48 6e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 47 8e-06
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 46 1e-05
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 43 1e-04
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 31 0.77
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 31 0.77
At1g30220.1 68414.m03697 sugar transporter family protein simila... 29 1.8
At4g34350.1 68417.m04881 LytB family protein contains Pfam profi... 28 4.1
At4g25390.2 68417.m03653 protein kinase family protein contains ... 28 5.4
At4g25390.1 68417.m03652 protein kinase family protein contains ... 28 5.4
At2g46530.2 68415.m05803 transcriptional factor B3 family protei... 27 7.2
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 27 7.2
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 27 9.5
At5g57000.1 68418.m07114 expressed protein similar to unknown pr... 27 9.5
At4g20190.1 68417.m02952 hypothetical protein 27 9.5
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 27 9.5
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g33570.1 68415.m04114 expressed protein 27 9.5
At1g50790.1 68414.m05712 hypothetical protein 27 9.5
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 54.8 bits (126), Expect = 4e-08
Identities = 49/179 (27%), Positives = 80/179 (44%)
Frame = +1
Query: 46 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGA 225
+ V +I + +D VNI A+D+Y P +P A ++ P N ++ D+ ++ W++
Sbjct: 179 YPVQAIADNLDFVNIMAYDFYGPGWSPVTGP-PAALFDPSNPAG-RSGDSGLSKWLEAKL 236
Query: 226 PTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKLINP 405
P K VLG S G W L+ D+E +G G G ++Y +I +I+
Sbjct: 237 PAKKAVLGFSYCGWAWTLE-DAENNGY------DAATDGAAISSDGSITYAKIRNYIID- 288
Query: 406 NQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLGG 582
NG +DP+ G Y + G W+ Y+D + +K Y K K L G
Sbjct: 289 --NG----AATFHDPAV-IGFYCY-------VGTTWIGYDDNQSIVSKVRYAKLKGLLG 333
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 54.0 bits (124), Expect = 7e-08
Identities = 47/175 (26%), Positives = 75/175 (42%)
Frame = +1
Query: 25 NVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAIN 204
+V + + V + +D VNI A+D+Y P + K TA ++ N + + D+ +
Sbjct: 175 SVYKTFTYPVQVMRESLDWVNIIAYDFYGPVSSSKFTVPTAGLHVSSNNEG-PSGDSGLK 233
Query: 205 YWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 384
WI++G P K VLG S G W L +D + +G A ++ G ++Y +I
Sbjct: 234 QWIKDGLPEKKAVLGFSYVGWAWTLQNDKD-TGYNAAAAGVAKSEDDVSE-DGSINYAQI 291
Query: 385 CAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNK 549
N+ + KV DP K G Y F W+ YED + K
Sbjct: 292 -------NKFIRDEEAAKVYDP-KVVGHYCFAKK-------IWIGYEDTQSVEAK 331
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 53.6 bits (123), Expect = 1e-07
Identities = 48/182 (26%), Positives = 75/182 (41%)
Frame = +1
Query: 37 SIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQ 216
S+ + V ++ + +D VN+ A+D+Y P + + A ++ P N P + DA WIQ
Sbjct: 188 SVLYPVSAVASSLDWVNLMAYDFYGPGWS-RVTGPPAALFDPSNAGP--SGDAGTRSWIQ 244
Query: 217 NGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKL 396
G P K VLG G W+L + + S P G P G + Y +I +
Sbjct: 245 AGLPAKKAVLGFPYYGYAWRLTNANSHSYYAP---TTGAAISP----DGSIGYGQIRKFI 297
Query: 397 INPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNL 576
++ NG S G Y + G W+ Y+D + K Y K + L
Sbjct: 298 VD---NGATTVYN-----STVVGDYCY-------AGTNWIGYDDNQSIVTKVRYAKQRGL 342
Query: 577 GG 582
G
Sbjct: 343 LG 344
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 51.2 bits (117), Expect = 5e-07
Identities = 46/179 (25%), Positives = 76/179 (42%)
Frame = +1
Query: 46 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGA 225
+ V +I N +D +N+ A+D+Y P + A +Y P + ++ D+ + W + G
Sbjct: 170 YPVLAISNSLDWINLMAYDFYGPGWSTVTGP-PASLYLPTDG---RSGDSGVRDWTEAGL 225
Query: 226 PTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKLINP 405
P K VLG G W L +D +++G GP G +SY ++ +++
Sbjct: 226 PAKKAVLGFPYYGWAWTL-ADPDVNGY------DANTTGPAISDDGEISYRQLQTWIVD- 277
Query: 406 NQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLGG 582
NG KV+D G Y + G W+ Y+ + K Y K K L G
Sbjct: 278 --NG----ATKVHD-DMMVGDYCY-------AGTTWIGYDSEKSIVTKVIYAKQKGLLG 322
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 49.2 bits (112), Expect = 2e-06
Identities = 49/186 (26%), Positives = 72/186 (38%)
Frame = +1
Query: 25 NVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAIN 204
N N +Y V I L+D VNI+A+D+Y P + T P A + + D+ +
Sbjct: 77 NYNGVVY-PVKFISELLDWVNIKAYDFY----GPGCTEVTGPPAALYLQSDGPSGDSGVK 131
Query: 205 YWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 384
WI G P K VLG G W L P H GP G +SY ++
Sbjct: 132 DWIDAGLPAEKAVLGFPYYGWAWTLAD-------PKNHGYYVDTTGPAISDDGEISYSQL 184
Query: 385 CAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVK 564
+++ V+D + G Y + G W+ Y+ ++ K Y K
Sbjct: 185 KTWIVDNKAT-------TVHD-NIVIGDYCY-------AGTTWIGYDSEESIVTKVIYAK 229
Query: 565 TKNLGG 582
K L G
Sbjct: 230 QKGLLG 235
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 47.6 bits (108), Expect = 6e-06
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Frame = +1
Query: 40 IYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 219
+ + V +I + +D VNI A+D+Y P +P A + P N ++ ++ + W+
Sbjct: 185 VEYPVKAIADNLDFVNIMAYDFYGPGWSPVTGPPAALFHDPSN-PAGRSGNSGLRKWLDE 243
Query: 220 G-APTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKL 396
P K VLG G W L+ D+E +G A G P G ++Y +I +
Sbjct: 244 AKLPPKKAVLGFPYCGWAWTLE-DAENNGYDA--ATDGAAISP----DGSITYAKIRNYI 296
Query: 397 INPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNL 576
++ NG +DP+ G Y + G W+ Y+D + K Y K L
Sbjct: 297 VD---NG----AATFHDPAV-IGFYCY-------VGNTWIGYDDNQSIVYKVKYAKFTGL 341
Query: 577 GG 582
G
Sbjct: 342 LG 343
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 47.2 bits (107), Expect = 8e-06
Identities = 33/116 (28%), Positives = 52/116 (44%)
Frame = +1
Query: 37 SIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQ 216
S+ V ++ + +D VN+ A+D+Y + + AP+Y P P + DA + W Q
Sbjct: 186 SVLHPVNAVADSLDWVNLVAYDFYE-SGSSRVTCSPAPLYDPITTGP--SGDAGVRAWTQ 242
Query: 217 NGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEI 384
G P K VLG G W L +D++ H +GP G + Y +I
Sbjct: 243 AGLPAKKAVLGFPLYGYAWCL-TDAK------NHNYYANSSGPAISPDGSIGYDQI 291
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 34 SSIYFDVPSIINLVDIVNIQAFDYY--TPERNPKEADYTAPIYAPQNRDPLQNADAAINY 207
+S+ + V +I +D VN+ A+++Y T E P A +Y P + P D + +
Sbjct: 157 NSVSYPVQAINRSLDWVNLIAYEFYGLTTEIGPP-----AGLYDPSIKGPC--GDTGLKH 209
Query: 208 WIQNGAPTHKLVLGISTTGRTWKLDSDSE 294
W++ G P K V G G +W LD D +
Sbjct: 210 WLKAGLPEKKAVFGFPYVGWSWTLDDDKD 238
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +1
Query: 28 VNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQN-RDPLQNADAAIN 204
V S+ + + I +D VN+ A+D+Y+ A ++ P N + P D +
Sbjct: 174 VYDSVSYPIREIKKKLDWVNLIAYDFYSSSTT---IGPPAALFDPSNPKGPC--GDYGLK 228
Query: 205 YWIQNGAPTHKLVLGISTTGRTWKLDSDSE 294
WI+ G P K VLG G TW L S ++
Sbjct: 229 EWIKAGLPAKKAVLGFPYVGWTWSLGSGND 258
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 30.7 bits (66), Expect = 0.77
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 220 GAPTHKL-VLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKL 396
G+ KL G ST G +W D S+ GV I+A GGE Y K + L
Sbjct: 249 GSGAQKLEAQGNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVL 306
Query: 397 INPNQNGKRPHLRKVNDPSK 456
Q+ + P +N P +
Sbjct: 307 HGKQQSRQNPREFVINHPDE 326
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 30.7 bits (66), Expect = 0.77
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 220 GAPTHKL-VLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKL 396
G+ KL G ST G +W D S+ GV I+A GGE Y K + L
Sbjct: 249 GSGAQKLEAQGNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVL 306
Query: 397 INPNQNGKRPHLRKVNDPSK 456
Q+ + P +N P +
Sbjct: 307 HGKQQSRQNPREFVINHPDE 326
>At1g30220.1 68414.m03697 sugar transporter family protein similar
to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
[Homo sapiens]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 580
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 173 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 283
++Y +PT++ + GF R LSLV+A L+ GS I
Sbjct: 294 VMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSII 330
>At4g34350.1 68417.m04881 LytB family protein contains Pfam profile:
PF02401 LytB protein
Length = 466
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 238 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 393
LV+G + T L SE G+P D GP K+ L Y E+ K
Sbjct: 372 LVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEK 423
>At4g25390.2 68417.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 497
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 400 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLG 579
N + + +RP R+ + S R T +F + G+GGF V + + G + VK + G
Sbjct: 74 NASSSPRRPSPREFSYSSLRRATGSFSQANRLGQGGFGVVFRGTISGGENVA-VKVMDSG 132
Query: 580 GV 585
+
Sbjct: 133 SL 134
>At4g25390.1 68417.m03652 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 651
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 400 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLG 579
N + + +RP R+ + S R T +F + G+GGF V + + G + VK + G
Sbjct: 74 NASSSPRRPSPREFSYSSLRRATGSFSQANRLGQGGFGVVFRGTISGGENVA-VKVMDSG 132
Query: 580 GV 585
+
Sbjct: 133 SL 134
>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 514
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 377 QKFAPNLLTPTKTESVLIFVRSTILANVLG-PMPSAFL 487
+ F+P+ LTPT T+ RS ++ + G P+ S+FL
Sbjct: 263 EPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 300
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 377 QKFAPNLLTPTKTESVLIFVRSTILANVLG-PMPSAFL 487
+ F+P+ LTPT T+ RS ++ + G P+ S+FL
Sbjct: 350 EPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 387
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 400 NPNQNGKRPHLRKVNDPSKRFGTYA 474
NPN N +R + K D S FG+YA
Sbjct: 44 NPNPNFERSNSSKQCDDSSEFGSYA 68
>At5g57000.1 68418.m07114 expressed protein similar to unknown
protein (gb|AAF21159.1)
Length = 187
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 526 LRKKPRSHLHHXHQE 482
L++KP HLHH H+E
Sbjct: 87 LKEKPPRHLHHHHKE 101
>At4g20190.1 68417.m02952 hypothetical protein
Length = 389
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/74 (21%), Positives = 28/74 (37%)
Frame = -3
Query: 591 DGHTAKVLCFHVTSFVSGRVRIFVRNPEATFTXIIRKAEGIGPKTFARIVDLTKMRTLSV 412
DG LC ++ F G+ R +++FT R ++ AR + LS
Sbjct: 208 DGFKCSALCLYLPGFSKGKPVRSSRKGDSSFT---RTTTMTSSQSMARTASIRDTAVLSA 264
Query: 411 LVGVNKFGANFWVA 370
+ +F W +
Sbjct: 265 RASLERFECGSWTS 278
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 442 NDPSKRFGTYAFRLPDDXGEG--GFWVSYEDPDTAGNKASYVKTKNLGG 582
N+ FG++AF L D GE G W+S +P+ + N GG
Sbjct: 253 NNGGGEFGSWAFNLNPDQGENDPGLWIS--EPNGVDSGLVAAPVMNNGG 299
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 477 EGIGPKTFARIVDLTKMRTLSVLVGVNKFG-ANFW 376
EGIG K R+++L R+ ++++ N+F A W
Sbjct: 401 EGIGEKVKKRLIELEPKRSGNLVIVANRFAEARMW 435
>At2g33570.1 68415.m04114 expressed protein
Length = 496
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 184 FVEDRGSAVRKSVQCSPPLWGYVQVYNSQMPGC 86
++ + G+++R Q P WGY +VY + C
Sbjct: 147 WISNNGTSIRAKAQKILPDWGYGRVYTVVVVNC 179
>At1g50790.1 68414.m05712 hypothetical protein
Length = 812
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/67 (20%), Positives = 31/67 (46%)
Frame = +1
Query: 10 ISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNA 189
++++PN + + I + +V I + ++Y P R + ++ P NR+ L
Sbjct: 345 VTLVPNRDDE-FISFARCIMVSQLVGIDSLEHYYPNRVASQFGRLQDVHCPVNRNNLSRE 403
Query: 190 DAAINYW 210
A +Y+
Sbjct: 404 AAWNDYY 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.136 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,660,580
Number of Sequences: 28952
Number of extensions: 305693
Number of successful extensions: 658
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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