Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I04
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...   256   1e-69
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   2.0  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   2.6  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   3.4  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   7.9  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   7.9  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score =  256 bits (628), Expect = 1e-69
 Identities = 117/191 (61%), Positives = 152/191 (79%)
 Frame = +3

Query: 3    KLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGL 182
            KL+Y+++SN++ LA TLV+L E+QGAVD ARKANS + WK+V  AC+D  EFRLAQ+CGL
Sbjct: 1211 KLMYSSISNWSMLATTLVYLGEYQGAVDCARKANSIKVWKQVGTACIDKREFRLAQICGL 1270

Query: 183  HIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMRE 362
            +++VHA+EL  LI  Y++RG+F+E+ISL+EA LGLERAHM  +TELAILY+KYKP +M E
Sbjct: 1271 NLIVHAEELPGLIRLYEERGYFEEVISLMEAGLGLERAHMAFYTELAILYAKYKPERMME 1330

Query: 363  HLELFWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWREGHFKDI 542
            HL+LFW R+N+ KV+RA +  HLW+E VFLY   + YDNAA  MM+ P EA+    FKDI
Sbjct: 1331 HLKLFWGRLNMAKVIRACDQMHLWNEAVFLYVHDQSYDNAAAVMMEQP-EAFDHQSFKDI 1389

Query: 543  ITKVANMELYY 575
            I  VAN+ELYY
Sbjct: 1390 IVHVANLELYY 1400


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 259 SVYWKRHWAWNELTWACSQSWRYS 330
           S+    HWA  EL W+CS+   +S
Sbjct: 316 SIVSTMHWASTELLWSCSKDGIFS 339


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 12  YNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVC 131
           Y N    + + ++L HLK F+ +++S    ++   +K VC
Sbjct: 46  YGNTCYVSSVLVSLYHLKPFRDSLNSYPLPSAPPNFKSVC 85


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 198 ADELEDLINYYQDRGHFDELISLLEAALGLERAHMG 305
           ADE E+    Y ++ H +    + E +  LER H G
Sbjct: 104 ADEAENEETSYSEQNHTENTEEIAEESRPLERTHSG 139


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 318 LAILYSKYKPAKMREHLELFWSRVNIPKVLRAAEHA 425
           L+IL S+ K ++   H+ +  +  N+PK+L+  ++A
Sbjct: 215 LSILASRLKSSEAPMHVHICHAIKNLPKILKKHDNA 250


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 328 SIASSVNMPM*ARSRPNAASNKLISSSKCPRS***LIRSSNSSA 197
           S++SS +  + A S   AAS  L SSS  P S   ++ SS+++A
Sbjct: 13  SLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATA 56


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 60  LKEFQGAVDSARKANSTRTWKEVC 131
           L+EF     S +++   R WKE C
Sbjct: 120 LEEFTACTSSLKQSKQKRLWKEHC 143


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 194 NDDMKATHLSQSELARVDASEANLL 120
           N D KATH+ +  +  +D  E NLL
Sbjct: 629 NLDGKATHIIKESIENLDIPEENLL 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,254
Number of Sequences: 5004
Number of extensions: 44818
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)