Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I04
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 272 1e-73
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 272 1e-73
01_06_0141 - 26905855-26906928 30 1.5
06_01_0868 - 6606913-6607000,6607516-6608010,6610313-6610761,661... 29 3.5
12_01_0236 - 1775941-1776034,1776185-1776504,1776569-1776786,177... 28 6.1
02_01_0114 - 857835-859464,860403-860444,860530-860537 28 6.1
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 27 8.1
03_05_0927 - 28874819-28877098,28877689-28877691 27 8.1
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 27 8.1
02_02_0147 - 7176478-7176832,7177006-7177334 27 8.1
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 272 bits (667), Expect = 1e-73
Identities = 118/191 (61%), Positives = 158/191 (82%)
Frame = +3
Query: 3 KLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGL 182
K++Y +SN+A+LA+TLV LK+FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CGL
Sbjct: 1229 KIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGL 1288
Query: 183 HIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMRE 362
+I+V D+LE++ YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+P K+ E
Sbjct: 1289 NIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLME 1348
Query: 363 HLELFWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWREGHFKDI 542
H++LF +R+NIPK++RA + W EL +LY +Y+E+DNAA T+M H +AW FKD+
Sbjct: 1349 HIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPDAWDHMQFKDV 1408
Query: 543 ITKVANMELYY 575
KVAN+ELYY
Sbjct: 1409 AVKVANVELYY 1419
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 272 bits (667), Expect = 1e-73
Identities = 118/191 (61%), Positives = 158/191 (82%)
Frame = +3
Query: 3 KLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGL 182
K++Y +SN+A+LA+TLV LK+FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CGL
Sbjct: 1229 KIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGL 1288
Query: 183 HIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMRE 362
+I+V D+LE++ YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+P K+ E
Sbjct: 1289 NIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLME 1348
Query: 363 HLELFWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWREGHFKDI 542
H++LF +R+NIPK++RA + W EL +LY +Y+E+DNAA T+M H +AW FKD+
Sbjct: 1349 HIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPDAWDHMQFKDV 1408
Query: 543 ITKVANMELYY 575
KVAN+ELYY
Sbjct: 1409 AVKVANVELYY 1419
>01_06_0141 - 26905855-26906928
Length = 357
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = +3
Query: 36 RLAITLV--HLKEFQGAVDSARKANSTRTWKEVCFACVDA 149
RLA+T++ H+++ + + +R T TW++V +AC+DA
Sbjct: 298 RLALTVMGAHMEKEKN-ITKSRWGEPTLTWEQVNYACIDA 336
>06_01_0868 -
6606913-6607000,6607516-6608010,6610313-6610761,
6610863-6610979,6611892-6612863
Length = 706
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 468 PRTYHTGTLIPTTGVRVPLPVEPSEC*HA--TRTAPSVP 358
P ++ TL+ RVPL +EP HA R PS+P
Sbjct: 444 PHIHYQQTLVARESQRVPLDIEPRLVPHALEPRHGPSIP 482
>12_01_0236 -
1775941-1776034,1776185-1776504,1776569-1776786,
1777315-1777723
Length = 346
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 456 DKYEEYDNAALTMMQHPTEAWREGHFKDIITKVAN 560
DKYE + + L ++ E W+ HF I+ ++ N
Sbjct: 308 DKYEGPEFSGLINLEFLQEIWKNKHFHGILVELCN 342
>02_01_0114 - 857835-859464,860403-860444,860530-860537
Length = 559
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 60 LKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIV 191
L+E + +D W+ + AC+ G RLA++ G+ I+
Sbjct: 418 LEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEII 461
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 336 KYKPAKMREHLELFWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDN 479
+Y ++E ++ W+ V P+V + A + ++ V YEE +N
Sbjct: 187 EYLTQALKEDIQKIWNAVRKPEVYKEAALSEFFNVEVTALSSYEEKEN 234
>03_05_0927 - 28874819-28877098,28877689-28877691
Length = 760
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 375 FWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWREGHFKDIIT 548
F+ +N P+ + E + W +++ DKY+ +DN+ L + + W +FK + T
Sbjct: 479 FYVCINEPETIEMFELS--WKKVL---DKYDLHDNSWLQSLYRIRQKWVPVYFKGVFT 531
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 44 HYACAPQGIPGCRRQRK 94
HYAC P +P CRR+R+
Sbjct: 73 HYACRPTSLP-CRRRRR 88
>02_02_0147 - 7176478-7176832,7177006-7177334
Length = 227
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 234 DRGHFDELISLLEAALGLERAHMGMFTELA 323
D G+ EL++++ AA+G R H G TE A
Sbjct: 69 DGGNGVELVAMVAAAVGRRRQHGGWSTETA 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,985,866
Number of Sequences: 37544
Number of extensions: 344826
Number of successful extensions: 1103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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