Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I04
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.) 360 e-100
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 33 0.22
SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082) 31 0.67
SB_31663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_28409| Best HMM Match : PSCyt2 (HMM E-Value=9) 29 3.6
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 28 6.3
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 28 6.3
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 27 8.3
SB_21574| Best HMM Match : T-box (HMM E-Value=0) 27 8.3
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 360 bits (885), Expect = e-100
Identities = 164/191 (85%), Positives = 178/191 (93%)
Frame = +3
Query: 3 KLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGL 182
KLLYNN+SNFA+LA TLVHL E+Q AVD ARKANST+TWKEVCFACVD GEFR+AQMCGL
Sbjct: 1040 KLLYNNISNFAKLASTLVHLGEYQAAVDGARKANSTKTWKEVCFACVDGGEFRMAQMCGL 1099
Query: 183 HIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMRE 362
HIVVHADELE+LINYYQ+RG F+ELI L+EAALGLERAHMGMFTELAILYSKYKP+KMRE
Sbjct: 1100 HIVVHADELEELINYYQNRGFFEELIGLMEAALGLERAHMGMFTELAILYSKYKPSKMRE 1159
Query: 363 HLELFWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWREGHFKDI 542
HLELFWSRVNIPKVLRAAE AHLWSELVFLY+KYEEYDNA TMMQHPT AW+EG FKD+
Sbjct: 1160 HLELFWSRVNIPKVLRAAEQAHLWSELVFLYEKYEEYDNAVQTMMQHPTVAWKEGLFKDV 1219
Query: 543 ITKVANMELYY 575
I KVAN+ELYY
Sbjct: 1220 ICKVANIELYY 1230
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 54 VHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ 233
+ L E + A + A +A R WK++ + +F+LAQ C LH HA + L+
Sbjct: 546 IQLGELRTAYEIAMEAEVERKWKQLAELAISKCQFQLAQEC-LH---HAQDFGGLLLLAT 601
Query: 234 DRGHFDELISLLEAA 278
G D + L A
Sbjct: 602 SSGDADMITRLAVTA 616
>SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)
Length = 628
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +3
Query: 405 LRAAEHAHLWSELVFLYD-KYEEYDNAALTMM------QHPTEAWREGHFKDIITKVAN 560
+R EH LW + V YD + +E A + M+ + P E ++G + ++T++ N
Sbjct: 343 IRTYEHEELWEKAVGAYDLRMQESPTAQIGMLKMIKVSKRPLEILKDGRIETVVTRLVN 401
>SB_31663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +3
Query: 351 KMREHL--ELFWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYD---NAALTMMQHPTEA 515
K+RE + E+ N P A EH + + VF D+Y+ +D N T+ P ++
Sbjct: 178 KLRETVREEILKDLANRPARFSADEHGDV--QFVFNGDEYDPFDKNGNLVKTLYHFPGDS 235
Query: 516 WREGHFKDII 545
W+ + +D +
Sbjct: 236 WKPENIQDFL 245
>SB_28409| Best HMM Match : PSCyt2 (HMM E-Value=9)
Length = 181
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +3
Query: 351 KMREHL--ELFWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYD---NAALTMMQHPTEA 515
K+RE + E+ N P A EH + + VF D+Y+ +D N T+ P +
Sbjct: 60 KLRETVREEILKDLANRPARFSADEHGDV--QFVFNGDEYDPFDKNGNLVKTLYHFPGNS 117
Query: 516 WREGHFKDII 545
W+ + +D +
Sbjct: 118 WKPENIQDFL 127
>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 465 EEYDNAALTMMQHPTEAWREGHFKDIITKVA 557
EE DN ALT Q A + G+F D I V+
Sbjct: 178 EEQDNFALTSQQRTETAQKAGYFSDEIVTVS 208
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 429 GVRVP--LPVEPSEC*HATRTAPSVPSS*P 346
GV+ P L P C HA R APSVP+ P
Sbjct: 2071 GVKCPDTLTATPRVCRHANRYAPSVPTRQP 2100
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 381 SRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWREG 527
SR++IP+ ++ A+ W V LYD Y+ ++ T + A+REG
Sbjct: 238 SRMSIPQAIQGADDTSKWRTFVALYD-YDPMKSSPNTNPEFEL-AFREG 284
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 381 SRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWREG 527
SR++IP+ ++ A+ W V LYD Y+ ++ T + A+REG
Sbjct: 1786 SRMSIPQAIQGADDTSKWRTFVALYD-YDPMKSSPNTNPEFEL-AFREG 1832
>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 141 VDAGEFRLAQMCGLHIVVHADELEDLINYY 230
++A E R +CG+ + DEL+D++ YY
Sbjct: 238 IEASELR-DLLCGMEKKIPEDELQDMLRYY 266
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -3
Query: 471 TPRTYHTGTL--IPTTGVRVPLPVEPSE----C*HATRTAPSVPSS 352
TPRT T + P+T P+ PS C H+T +APS PS+
Sbjct: 29 TPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPST 74
>SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 90 ARKANSTRTWKEVCFACVDAGEFRLAQMCGL---HIVVHADELEDLINYYQD--RGHFD 251
+R N TRT E C A ++ G+ +A GL ++VH + D I D GH D
Sbjct: 58 SRSGNPTRTCFEECVAALEGGKHGIATSSGLAATMLLVHTLKSGDHIACIDDVYGGHSD 116
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Frame = +1
Query: 238 GDTLMN*SVY--WKRHWAWNELTWACSQSWRYSTLST-SRLR*GNTWSCSGRVSTFRRFY 408
G T N S + W + W+ W+ +W ++ ST + N WS ST+ +
Sbjct: 24 GTTYNNWSTHNNWSTYNDWSHNNWSTYNNWSHNNWSTYNNWSTYNNWSTYNNWSTYNNWS 83
Query: 409 GQRNTHT 429
N T
Sbjct: 84 TYHNWST 90
>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
Length = 473
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 414 AEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWRE---GHFKDIITKVANMELYY 575
A ++ S +Y+ + + NAAL + + + AW + G D I AN+ +Y
Sbjct: 414 ASYSESLSPFRAVYNSIQAFPNAALALNSNTSHAWPQLLGGEIFDDIPYTANLPYFY 470
>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2051
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 191 DDMKATHLSQSELARVDASEA-NLLPCPSRVSFPCAVDGTLEFLEVHKR 48
D + A+ +S EL R A+ A +P PS+ +GT+ F++V +R
Sbjct: 1813 DPVSASTISILELPRGSAAVAMTAMPAPSQSVVVGTSEGTVRFIDVRQR 1861
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,509
Number of Sequences: 59808
Number of extensions: 380759
Number of successful extensions: 1130
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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