Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I04
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...   367   e-102
Z81579-3|CAB04658.1|  248|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    27   9.5  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score =  367 bits (903), Expect = e-102
 Identities = 165/191 (86%), Positives = 184/191 (96%)
 Frame = +3

Query: 3    KLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGL 182
            K+L+NNVSNFA+L++TLV L E+QGAVD+ARKANST+TWK+VCF+CV+ GEFRLAQMCGL
Sbjct: 1217 KILFNNVSNFAKLSVTLVRLGEYQGAVDAARKANSTKTWKQVCFSCVENGEFRLAQMCGL 1276

Query: 183  HIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMRE 362
            HIVVHADELE+LIN+YQDRGHF+ELI+LLEAALGLERAHMGMFTELAILYSKYKP KMRE
Sbjct: 1277 HIVVHADELEELINFYQDRGHFEELIALLEAALGLERAHMGMFTELAILYSKYKPEKMRE 1336

Query: 363  HLELFWSRVNIPKVLRAAEHAHLWSELVFLYDKYEEYDNAALTMMQHPTEAWREGHFKDI 542
            HLELFWSRVNIPKVLRAAE AHLWSELVFLYDKYEEYDNAALTMMQHPTE+WRE HFK++
Sbjct: 1337 HLELFWSRVNIPKVLRAAEQAHLWSELVFLYDKYEEYDNAALTMMQHPTESWREQHFKEV 1396

Query: 543  ITKVANMELYY 575
            I KVAN+ELYY
Sbjct: 1397 IAKVANVELYY 1407


>Z81579-3|CAB04658.1|  248|Caenorhabditis elegans Hypothetical
           protein R13H4.6 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 120 KEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAH 299
           KE      DA  F L   C + +  H  E+   + YY +  H D   ++L  ALGL  A 
Sbjct: 89  KEGARLAYDAVTFNL---CSMGVSQHPREVR--VQYYAE-SHLDRKSAILTTALGLMAAF 142

Query: 300 MGM 308
            GM
Sbjct: 143 TGM 145


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
          protein T06C12.3 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 6  LLYNNVSNFARLAITLVHLKEFQGA 80
          LL  ++SNF  + I+L H K+ QGA
Sbjct: 15 LLICSISNFTLIYISLFHSKQIQGA 39


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -3

Query: 525 PR-AKPRSDAASW*APRCHTPRTYHTGTLIPTTG---VRVPLPVEPSEC*HATRTAPSVP 358
           PR A PR++ +    P    P+T    T +P TG     VP+ V P     +T T+ + P
Sbjct: 706 PRTAPPRTEVSMTLPPETVPPKTEAPRTEVPMTGPSRTEVPMTVTPETGLSSTVTSKTEP 765

Query: 357 SS*PACT*SRVSP 319
                 T  R++P
Sbjct: 766 PK--TTTEKRITP 776


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 114 TWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ-----DRGHFDELISLLE 272
           TW +V  + ++    R+   C     +  + + +++NY Q     D+ H DELIS+++
Sbjct: 80  TWNQVIHSVINTKTDRIYSKC-----LQCELIREMVNYVQIKSFSDKLHADELISIMK 132


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 114 TWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ-----DRGHFDELISLLE 272
           TW +V  + ++    R+   C     +  + + +++NY Q     D+ H DELIS+++
Sbjct: 80  TWNQVIHSVINTKTDRIYSKC-----LQCELIREMVNYVQIKSFSDKLHADELISIMK 132


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 114 TWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ-----DRGHFDELISLLE 272
           TW +V  + ++    R+   C     +  + + +++NY Q     D+ H DELIS+++
Sbjct: 80  TWNQVIHSVINTKTDRIYSKC-----LQCELIREMVNYVQIKSFSDKLHADELISIMK 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,921
Number of Sequences: 27780
Number of extensions: 268189
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)