Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I03
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   7.0  
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.2  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   9.2  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 237 FDVIIRLGF--YNWDEGNYFRTLDGQTLEAAGYAKWAKGQ 350
           FD I+ L F      +G  FRTL G+T+E A     A G+
Sbjct: 535 FDAIMPLLFNVLQQADGKEFRTLRGKTMECATLIALAVGK 574


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 334 NGQKDNRITSFLGKSRIAAACSGML 408
           +G KD R++  LGK ++ +  +G+L
Sbjct: 143 SGNKDFRVSKTLGKPQVFSGLTGLL 167


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/73 (20%), Positives = 28/73 (38%)
 Frame = +3

Query: 198 LFAQHPAQTLTVSFDVIIRLGFYNWDEGNYFRTLDGQTLEAAGYAKWAKGQPDNQFSRQK 377
           L  + P +    SF       F+   +  +    DG    A  Y    KG+    + + K
Sbjct: 274 LLKERPPKLPAASFIQTYLDSFHAQPKPLFDNKFDGDAALAEAYEYLEKGEYQLSYDKAK 333

Query: 378 QNCGGMFRDATLD 416
           ++C G F   +++
Sbjct: 334 ESCLGSFSSPSVN 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,972
Number of Sequences: 5004
Number of extensions: 37919
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)