Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I03
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0140 + 12700740-12700935,12701082-12701515                       28   5.3  
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    27   7.1  
03_03_0243 - 15769102-15769106,15769820-15769950,15770025-15770338     27   7.1  
01_06_1608 - 38612754-38616947,38617030-38617095                       27   7.1  
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983...    27   9.3  

>09_03_0140 + 12700740-12700935,12701082-12701515
          Length = 209

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 112 IPLRRRSAQRRAATWPSSIVKQK 180
           +P RRR  QRR A   +S+V+Q+
Sbjct: 104 LPCRRRGGQRRVAVVEASVVRQR 126


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 84   YKFHSVGRPYSVAAAICSAEGGHLAII 164
            Y F+  G P  +AA +CS +G HLA++
Sbjct: 1349 YPFNPNGSPLGIAA-LCSPDGRHLAMM 1374


>03_03_0243 - 15769102-15769106,15769820-15769950,15770025-15770338
          Length = 149

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 248 YNIKRDGEGLSGMLCEQVPQDLGFCFTIDDGQVAALR*ADRRRNGIRSSYAMK-LVTLVS 72
           +N   DG  +SG+   +  +  GF F+     + AL  AD+ RNG    + ++ LVT   
Sbjct: 37  FNTNNDGR-ISGVELREAIRSKGFGFSAWWKSIVALHQADKDRNGYIDEFEIENLVTFAQ 95

Query: 71  PLV 63
            ++
Sbjct: 96  KVL 98


>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 84   YKFHSVGRPYSVAAAICSAEGGHLAII 164
            Y F+  G P  +AA +CS +G HLA++
Sbjct: 1353 YPFNPNGSPLGIAA-LCSPDGRHLAMM 1378


>06_03_0956 +
           26296744-26297382,26297595-26297669,26298147-26298341,
           26298426-26298559,26298713-26298779,26298985-26299043,
           26299204-26299321,26299613-26299726,26299855-26299986,
           26300076-26300492,26300904-26300954,26301303-26301373,
           26302067-26302151,26302258-26302410,26302522-26302596,
           26302755-26302844,26303953-26304000,26304081-26304195,
           26305356-26305459,26305582-26305692
          Length = 950

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 30  ECGTTDKEYKMDQRTNKCYKFHSVGRPYSVAAAICSAEGGHLAIINSETEAEVL 191
           +C  +      D   N    + ++GR Y  AAA+    G   A I SE  A VL
Sbjct: 640 QCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPADIYSEIAARVL 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,386
Number of Sequences: 37544
Number of extensions: 283076
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)