Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I03
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74260.1 68414.m08600 AIR synthase-related family protein con...    30   1.1  
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    29   1.5  
At5g54020.1 68418.m06719 expressed protein                             29   1.9  
At5g43400.1 68418.m05305 expressed protein strong similarity to ...    29   1.9  
At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domai...    29   1.9  
At1g78800.1 68414.m09184 glycosyl transferase family 1 protein c...    28   3.4  
At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    28   3.4  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 28   4.5  
At1g08810.2 68414.m00980 myb family transcription factor (MYB60)       27   5.9  
At1g08810.1 68414.m00981 myb family transcription factor (MYB60)       27   5.9  
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ...    27   7.8  

>At1g74260.1 68414.m08600 AIR synthase-related family protein contains
            Pfam profiles: PF00586 AIR synthase related protein,
            N-terminal domain, PF02769 AIR synthase related protein,
            C-terminal domain
          Length = 1387

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 63   DQRTNKCYKFHSVGRPYSVAAAICSAEGGHLAII 164
            D    + Y F+  G P  +AA ICS +G HLA++
Sbjct: 1312 DGNVTEAYPFNLNGSPLGIAA-ICSPDGRHLAMM 1344


>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 360 QFSRQKQNCGGMFRDATLDDTLCDDHLAFI-CEKDPKKLQ 476
           Q SR+ Q C     D  L+ T+CDD+  F+ C   P+K++
Sbjct: 418 QSSRRCQACDREIHDDPLNCTVCDDYSLFMRCATLPRKVK 457


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 360 QFSRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 476
           Q SRQ Q CG       L  T+CDD+ L   C   P+K++
Sbjct: 406 QSSRQCQACGTKIDHDPLSCTVCDDYSLCMRCTTLPRKVK 445


>At5g43400.1 68418.m05305 expressed protein strong similarity to
           unknown protein (emb|CAB86628.1)
          Length = 655

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 198 LFAQHPAQTLTVSFDVIIRLGFYNWDEGNYFRTLDGQTLEAAGYAKWAKG-QPDNQFSRQ 374
           L+  HP +TL ++   ++  G++       FR L+GQ +E      W K  Q   +  R+
Sbjct: 128 LYKNHP-KTLALNVPALVDFGYFKDLPEILFRILEGQNMERGKNRVWRKRVQRKFKGKRE 186

Query: 375 KQN-CGGMFRDATLDD 419
           K++   G   D  L++
Sbjct: 187 KKSEISGEMEDRILEN 202


>At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 692

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 234 SFDVIIRLGFYNWDE--GNYFRTLDGQ 308
           SF+ ++  GFY+ D   GN+ RT DGQ
Sbjct: 330 SFNQLLEYGFYHADPHPGNFLRTYDGQ 356


>At1g78800.1 68414.m09184 glycosyl transferase family 1 protein
           contains similarity to glycosyltransferase GI:871530
           from [Saccharomyces cerevisiae], Alg2
           mannosyltransferase [gi:3868942] from Rhizomucor
           pusillus; contains Pfam profile: PF00534 Glycosyl
           transferases group 1
          Length = 403

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 287 IVALVPIVETQSNYNIKRDGEGLSGMLCEQVPQDLGFCFT--IDDGQVAALR*ADRRRNG 114
           + A  P++   S   ++    G++G LCE  P+D        I++ ++A  R     RN 
Sbjct: 317 MAAYKPVIACNSGGPVETVKNGVTGYLCEPTPEDFSSAMARFIENPELAN-RMGAEARNH 375

Query: 113 IRSSYAMK 90
           +  S+++K
Sbjct: 376 VVESFSVK 383


>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 78  KCYKFHSVGRPYSVAAAICSAEGGHLAIINSETEAEVLRNL 200
           KCY +      +  +   C   GGHLA + S  E   ++ L
Sbjct: 62  KCYAYFKNSTSWEKSEMFCRTYGGHLASLASSKELSFVQKL 102


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 360 QFSRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 476
           Q SR+ Q C    +D  L+ T+CD++ L   C   P+K++
Sbjct: 429 QSSRRCQACNKEIKDDPLNCTVCDEYSLCMRCATLPRKVK 468


>At1g08810.2 68414.m00980 myb family transcription factor (MYB60)
          Length = 197

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 39  TTDKEYKMDQRTNKCYKFHSVGRPYSVAAAICSAEGGHLAIINSETE 179
           TT  E+KM  RTN     HS   PY       S E GH   IN + +
Sbjct: 89  TTFLEHKMQNRTNNFIDHHSDQFPYEQLQG--SWEEGHSKGINGDDD 133


>At1g08810.1 68414.m00981 myb family transcription factor (MYB60)
          Length = 280

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 39  TTDKEYKMDQRTNKCYKFHSVGRPYSVAAAICSAEGGHLAIINSETE 179
           TT  E+KM  RTN     HS   PY       S E GH   IN + +
Sbjct: 172 TTFLEHKMQNRTNNFIDHHSDQFPYEQLQG--SWEEGHSKGINGDDD 216


>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 470

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 366 SRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 476
           S++ Q CG    D  L+ T+CDD+ L   C   P+K++
Sbjct: 319 SKRCQACGTETDDNLLNCTVCDDYALCMKCATLPRKVK 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,121,911
Number of Sequences: 28952
Number of extensions: 210047
Number of successful extensions: 506
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)