Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I02
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 30 1.2
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 2.7
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 8.3
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 33.9 bits (74), Expect = 0.096
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 376 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVKIHDVVVEKLVTFFD 555
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 556 YG 561
YG
Sbjct: 240 YG 241
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 317 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 409
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +2
Query: 296 NDLMKLLLAMCSVQHLN--HSTSTPSCPVRLTFTKP---HFETLHS-ISYXTGLWVTLTH 457
++L L ++ HLN HST T S LT T H +S I++ T +TLTH
Sbjct: 25 SNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 458 SSIT*SLILKRNFISSALKSMMLSLRN*SHS 550
++T S + S L L+ +HS
Sbjct: 85 LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHS 115
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 341 LNHSTSTPSCPVRLTFTKPHFETLH-SISYXTGLWVTLTHSSIT*SLILKRNFISSALKS 517
L H T T S T T H H +++Y T TLTHS++T S + S +
Sbjct: 62 LTHLTITYSTITHSTLT--HLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITH 119
Query: 518 MMLSLRN*SH 547
L+ N +H
Sbjct: 120 STLTHSNLTH 129
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 341 LNHSTSTPSCPVRLTFTKP---HFETLH-SISYXTGLWVTLTHSSIT*SLILKRNFISSA 508
L H T T S LT T H H ++++ T + TLTHS++T S + S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHST 111
Query: 509 LKSMMLSLRN*SHS 550
L ++ +HS
Sbjct: 112 LTHSTITHSTLTHS 125
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 31 TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 201
T Y P T S Y Q+P+N++LH +A+ T L GKF+S G+
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770
Query: 202 IDFHD 216
D H+
Sbjct: 4771 RDVHE 4775
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 223 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 92
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +1
Query: 166 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 297
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 299 DLMKLLLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYXTG 436
++ K+LL + + ++ S PV+L H ETL +SY G
Sbjct: 264 EVAKVLLRSGAAESIHIENSNGKTPVQLAKESGHSETLELVSYDYG 309
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 181 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 321
FE Y ++ DEKA ++ Y ++ A + E +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,731,792
Number of Sequences: 59808
Number of extensions: 367492
Number of successful extensions: 1080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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