Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I02
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-23|AAP31422.1|  187|Caenorhabditis elegans Hypothetical...    31   0.59 
AC084158-22|AAM15623.1|  214|Caenorhabditis elegans Hypothetical...    31   0.59 
AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical...    31   0.59 
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    29   2.4  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    29   2.4  
U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF101305-8|AAF98599.1|  534|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    28   5.5  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   5.5  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    28   5.5  
Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    27   7.2  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    27   7.2  

>AC084158-23|AAP31422.1|  187|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7c protein.
          Length = 187

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +2

Query: 269 MKKKLQRIINDLMKLLLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 418
           ++K  QR+ +D+ + +L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150


>AC084158-22|AAM15623.1|  214|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7b protein.
          Length = 214

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +2

Query: 269 MKKKLQRIINDLMKLLLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 418
           ++K  QR+ +D+ + +L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177


>AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7a protein.
          Length = 271

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +2

Query: 269 MKKKLQRIINDLMKLLLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 418
           ++K  QR+ +D+ + +L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 214 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 128
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 43  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 214 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 128
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 35  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63


>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 94  NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 273
           NL+  KN+  I++ D F  T   +++ G   S G   +  D    N  G  +    D Y 
Sbjct: 93  NLYLFKNHSDIQYYDRFSSTGYINVRSGHQHSIGS--NECDGFIQNTFGQNYTFRRDFYN 150

Query: 274 EEVTKDY--QRSYEIVAR 321
           ++ T+D   QR+  ++AR
Sbjct: 151 DDGTRDLANQRTGFLLAR 168


>AF101305-8|AAF98599.1|  534|Caenorhabditis elegans Hypothetical
           protein C04F5.9 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 399 CGLVKVKRTGHEGVLVEWFRCCTEHMASNNFIRSLIILCNFFF 271
           C L+  + T H    V   RCC   +  N+ +  +  LC F F
Sbjct: 119 CNLLMPRGTLHHHYSVHTGRCCPAEITQNSVVPYVCDLCGFGF 161


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 275 KKLQRIINDLMKLLLAMCSVQHLNHSTSTPSCPVRLTFTKPHFE 406
           K+ Q+  ++L K+        H + STS+   P  +TF+ P FE
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFE 368


>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical
           protein D2085.4 protein.
          Length = 1001

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 227 LTLSETIGKRTPICMKKKLQRIINDLMKLLLAMCSVQHLNHST 355
           +TLSE +  +T     K+ ++ I +  +LLLA C ++ L ++T
Sbjct: 91  MTLSELVKLKTS---DKEFEKRIRETQRLLLARCCIKFLKNAT 130


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 344 NHSTSTPSCPVRLTFTKPHFETLHSISYXT--GLWVTLTHSSIT 469
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 344 NHSTSTPSCPVRLTFTKPHFETLHSISYXT--GLWVTLTHSSIT 469
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 211 HDEKAINFVGNYWQENADLYEEEV 282
           HDE A+N    Y+Q + DL E++V
Sbjct: 75  HDELAVNNADEYFQGDVDLSEQQV 98


>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +1

Query: 37  YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 216
           Y P + S +  F   P ++NL+   +     F+     T + + +K K E++  ++  H 
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58

Query: 217 EK 222
            +
Sbjct: 59  HR 60


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +1

Query: 37  YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 216
           Y P + S +  F   P ++NL+   +     F+     T + + +K K E++  ++  H 
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58

Query: 217 EK 222
            +
Sbjct: 59  HR 60


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 146  KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 304
            KR+        N+ R  ++ + +M+  L  +ET  K   + +KKKL+  INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 146  KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 304
            KR+        N+ R  ++ + +M+  L  +ET  K   + +KKKL+  INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,188
Number of Sequences: 27780
Number of extensions: 284266
Number of successful extensions: 855
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)