Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I01
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    29   0.42 
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    27   0.98 
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   1.3  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   4.0  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.9  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   6.9  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    24   9.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   9.1  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 315 YDTSFVFGQKSFRIEFLRFWKE 250
           YD  +V G ++ R+ FL+ WKE
Sbjct: 906 YDRGYVRGLRTLRLYFLKIWKE 927


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 400 QSEALCLLSETKAKTICRPFTN-RQISVGLRYKLRFR-AEIFQDRISQVLERIRD 242
           + +   LL+E   + +    T  R  ++ +   L F+ +++   R+SQ+LER+RD
Sbjct: 214 KDDGALLLNERNVEILVNKLTQMRGAALKMGQMLSFQDSKLIDPRVSQILERVRD 268


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 406 RDQSEALCLLSETKAKTICRPFTNRQISVGLRYKLRFRAEIFQDRISQVLERIRDPSACP 227
           RDQ E LCL++  KA +     +N  + +           I Q  +S  L RI+  +A  
Sbjct: 142 RDQPELLCLVTRKKAGSQPVEESNTSLDMSTISSELQNIRIQQMNLSNELSRIQVDNAAL 201

Query: 226 WR 221
           W+
Sbjct: 202 WQ 203


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 126 FPPMGWIDRVAAHDYAIDDKLTI 194
           FP +GW +++  + Y IDD   I
Sbjct: 216 FPEIGWNNKLVGNVYLIDDSCKI 238


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 191 GKFIVYRVVVSGNSVNP 141
           G F  Y VVV+GN VNP
Sbjct: 304 GPFPNYPVVVNGNGVNP 320


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 126 FPPMGWIDRVAAHDYAIDDKLTISGGTPVYCE 221
           + P  W+ + ++   ++D K T+   TP  CE
Sbjct: 311 YKPKSWLPKNSSCSLSVDVKATLLETTPPSCE 342


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 132 PMGWIDRVAAHDYAIDDKLTISGG 203
           P GW++++ ++D+A    + IS G
Sbjct: 175 PNGWLNKLGSYDFAGGSPVHISSG 198


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 230 PMAFTIDRCTSGNGKFIVYRVVVSGNSV 147
           P+ +  D+  S NG F+ +R++  GNSV
Sbjct: 97  PLVYCEDQ--SSNGTFLNHRLIGKGNSV 122


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 346 AYKLFWPSFRTTNIALRFGLDHLELRS 426
           AY+ + P F +T  AL FGL    + S
Sbjct: 399 AYQNYSPIFMSTTYALAFGLSFASITS 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,943
Number of Sequences: 5004
Number of extensions: 33209
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)