Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H23
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 29 0.67
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 28 1.2
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 1.5
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 2.0
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 3.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 3.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.6
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 8.3
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 28.7 bits (61), Expect = 0.67
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = -3
Query: 573 SRSCSTIL-YINQRGATIPSAVSFRPILYFPFAITLYSHDRENKHXXXXXXXXXXXAVGK 397
SRS T++ + +G + A F P+ FA+T S + G
Sbjct: 177 SRSGHTLMSQLKSKGRNV-MATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGV 235
Query: 396 LEPYNLSHTSCNAVQNVSARFKS 328
N+ H C A+ +S ++ S
Sbjct: 236 FMGANVGHACCTALAVISGKYIS 258
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -3
Query: 288 TVGDDEAKIIPLDLFFPTSSRDLLISWSNSKLRLLTGGR-CIVSTAIPSLSTVKSTNGPA 112
T G D I L + PTSS +LL LRL G R C++ SL V P
Sbjct: 326 TEGTDIPNIDCLMIARPTSSPNLLTQMIGRGLRLHEGKRDCLILDFCDSLRRVSLHVDPT 385
Query: 111 LADIN 97
LA ++
Sbjct: 386 LAGLS 390
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 1.5
Identities = 30/105 (28%), Positives = 50/105 (47%)
Frame = +2
Query: 275 SSPTVFSAGLDIMEMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFS 454
+SPT+F+AG +P L + F ++D ++ + A I+ AGG +
Sbjct: 201 ASPTLFNAGTP-----RPQL--SSCFLVTMKDDSIEGIYDTLKMCAMIS--KTAGGIGIN 251
Query: 455 LSCEYRVMANGKYSIGLNETALGIVAPRWFMYSMVEHDLEQGSGN 589
+ + + A G Y G N T+ GIV P +Y+ ++QG GN
Sbjct: 252 I---HNIRATGSYIAGTNGTSNGIV-PMIRVYNNTARYVDQG-GN 291
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 32 HKTMLPLRYLINNVKSAVPNCRLMSAKAGPLVDLTVDNEGIAVLTM--QRPPVNSLNLEL 205
++ +L + N VKS++ L + D+TV N+G +L++ P + +EL
Sbjct: 24 NQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVEL 83
Query: 206 LQDISKSLDD 235
Q K + D
Sbjct: 84 AQQQDKEVGD 93
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 263 ILASSSPTVFSAGLDIMEM-YKPDLKRAETFWTALQDVWLKLYGSSFPTAAAINGH 427
I+ +S F+ GL E P RA+ F + ++W + ++P AA GH
Sbjct: 1039 IIGGTSIGAFNGGLYAWEADLVPMFGRAKKFCGRMANLWRFVLDVTYPQAAYTTGH 1094
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 161 LTMQRPPVNSLNLELLQDISKSLDDVGKNKSKGMILASSSPTVFSAGLDIMEMY 322
L +++P VNS +QD++ S S G ++SP +F+ ++ Y
Sbjct: 215 LKLRKPGVNSRPAPPVQDVTSSTKYGSSTGSSGFNTFNTSPHIFNQRHQYLQNY 268
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 185 NSLNLELLQDISKSLDDVGKNKSKGMILASSSPTVFSAGLDIMEMYKPDLKRAE 346
NS +E ++ I+ SLDD + + + + S L +ME K L+ A+
Sbjct: 1455 NSSLMEKIESINSSLDDKSFELASAVEKLGALQKLHSESLSLMENIKSQLQEAK 1508
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +2
Query: 101 MSAKAGPLVDLTVDNEGIAVLTMQRPPVNSLNLELLQDISKSLDDVGKNKSKGMILASS 277
+ AK DL++ E ++ +Q+P +NSL ++ + S D ++S + SS
Sbjct: 222 LHAKQISASDLSLHQEFVSASIVQQPELNSLLTSQSKNSTPSESDSSSSESSSSVSDSS 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,986
Number of Sequences: 5004
Number of extensions: 49207
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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