Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H23
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   1e-35
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_34818| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)                   35   0.043
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.057
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               29   3.8  
SB_4923| Best HMM Match : 7tm_1 (HMM E-Value=0.12)                     28   5.0  

>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score =  146 bits (354), Expect = 1e-35
 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
 Frame = +2

Query: 161 LTMQRPPVNSLNLELLQDISKSLDDVGKNKS-KGMILASSSPTVFSAGLDIM-EMYKPDL 334
           +T+ R PVNS +LE L++I  +L+D+  N   +G+I+ SS P VFSAGLD++ E+YK D 
Sbjct: 1   MTLSRKPVNSFSLEFLEEIHDTLEDLESNTDCRGLIVTSSMPKVFSAGLDLVKELYKSDE 60

Query: 335 KRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFSLSCEYRVMANGKYSIGLNET 514
           KR   FW   QDVW++LYGS   T AA+NGHA AGGCL + +C+YR+MA   ++IG+NET
Sbjct: 61  KRLFVFWRRFQDVWMQLYGSRLATVAAVNGHAVAGGCLLAAACDYRLMA-ANFTIGMNET 119

Query: 515 ALGIVAPRWFMYSMV 559
            +GI  P W   ++V
Sbjct: 120 IVGIAIPFWISQNIV 134


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 41/87 (47%), Positives = 54/87 (62%)
 Frame = +2

Query: 281  PTVFSAGLDIMEMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFSLS 460
            P +F AGLD+ E+      +  TF    QD+W +LYGS   T AAI GHA AGGC+ SL+
Sbjct: 1475 PNIFCAGLDLKEVLALRKSKLVTFRKTFQDMWSRLYGSRLVTMAAIKGHAIAGGCVLSLA 1534

Query: 461  CEYRVMANGKYSIGLNETALGIVAPRW 541
            C+Y VMA+  + IGL E +LG+    W
Sbjct: 1535 CDYSVMAS-DFRIGLPELSLGLYFAPW 1560


>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
 Frame = +2

Query: 122 LVDLTVDNEGIAVLTMQRPP-VNSLNLELLQDISKSLDDVGKNKSKGMILASSSPTVFSA 298
           L +   ++  +  + + RP  +N+L  +L+ ++S +LD    +K+ G I+ +     F+A
Sbjct: 41  LTETKGESNNVGFIQLNRPKALNALCNDLMYELSDALDAFEADKNVGCIVLTGCGRAFAA 100

Query: 299 GLDIMEMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFSLSCEYRVM 478
           G DI EM +P L   +         W ++   + P  AA+NG A  GGC  ++ C+  + 
Sbjct: 101 GADIKEM-QP-LTYQKCLSGDFLGHWTRVSKCTKPVIAAVNGFALGGGCELAMMCDI-IY 157

Query: 479 ANGKYSIGLNETALGIV 529
           A+ K   G  E  +G +
Sbjct: 158 ASDKAKFGQPEILIGTI 174


>SB_34818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
 Frame = +2

Query: 131 LTVDNEGIAVLTMQRPPVNSLNLE-LLQDISKSLDDVGKNKSKGMILASSSPTVFSAGLD 307
           +++DNE +  L M+    + LN++  +Q  +K    + + KS+  +   + P +FS G D
Sbjct: 124 ISMDNE-LEEL-MKEIEGDGLNVDNFIQQNNKKEIPLDRTKSEEGLDGMNIPRIFSYGTD 181

Query: 308 IMEMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAIN 421
           I E+Y+    R + +    Q+ W +LYGS   T A+IN
Sbjct: 182 INELYQTKADRLKVYRRRQQEFWQRLYGSRLATVASIN 219


>SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
 Frame = +2

Query: 131 LTVDNEG-IAVLTMQRPPVNSLNLELLQDISKSLDDVGKNKS-KGMILAS 274
           + ++++G +A + + R PVNS N++L+++I   L+D+  NK  +G+I+ S
Sbjct: 52  VNIESKGSVATIKLNRKPVNSFNMQLMEEICLILEDLESNKDCRGLIITS 101


>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
          Length = 230

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 401 PTAAAINGHAPAGGCLFSLSCEYRVMAN-GKYSIGLNETALGIV 529
           P  AAI G    GG   +LSC YR+  N GK  +   E  LG++
Sbjct: 5   PVVAAIMGTCMGGGLELALSCHYRIAVNDGKTVLSAPEVMLGLL 48


>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
 Frame = +2

Query: 152 IAVLTMQRPPV-NSLNLELLQDISKSLDDVGKNKSKGMILASSSPTVFSAGLDIMEMYKP 328
           + V+++ RP   N++N E    +S++      + S  + + +     F AG D+ E+ + 
Sbjct: 38  VLVVSIARPEKRNAINSETADQLSETFRHFEIDDSVNVAVLTGKGGNFCAGSDLQELAQK 97

Query: 329 DLKRAETFWTALQDVWL---KLYGSSFPTAAAINGHAPAGGCLFSLSCEYRV 475
           D   AET+  +          +  ++ P   AI G+A  GG   +L C+ RV
Sbjct: 98  D---AETYMKSFYPPGEGDGPMAEANQPVIGAIQGYAVGGGLELALLCDLRV 146


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
 Frame = +2

Query: 59   LINNVKSAVPNCRLMSA-KAGPLVDLTVDNEGIAVL--TMQRPPVNSLNLELLQD-ISKS 226
            +I+N K      +L +A K  PL D  + N+ +A L  +++RPP+N+  L L +D I++ 
Sbjct: 4518 IISNNKETTQLLKLRAASKISPLTDENI-NQILADLKNSVRRPPLNNDQLTLTKDTINEI 4576

Query: 227  LDD 235
            LDD
Sbjct: 4577 LDD 4579


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = -3

Query: 291  NTVGDDEAKIIPLDLFFPTSSRDLLISW-----SNSKLR-LLTGGRCIVST 157
            + + +D  +I+P  LF+P + R LL SW     SN +++  LT G C+ ST
Sbjct: 1273 DAIHNDVHRILPYMLFYPETVRHLLNSWAANQYSNGRMQEALTEG-CLGST 1322


>SB_4923| Best HMM Match : 7tm_1 (HMM E-Value=0.12)
          Length = 595

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 14  LRHF*NHKTMLPLRYLINNVKSAVPNCRLMSAKAGPLV--DLTVDNEGIAVLTMQRPPVN 187
           ++H    KT + +  + NN  S      ++S    P+    LTVD+E I  + + R  VN
Sbjct: 259 MKHLYAKKTQIQITAMANNSSSGETGHSVLSCSWLPVETWQLTVDSETIKTVALTRALVN 318

Query: 188 SL 193
           S+
Sbjct: 319 SV 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,153,186
Number of Sequences: 59808
Number of extensions: 364838
Number of successful extensions: 736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)