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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H23
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    68   4e-12
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    62   4e-10
At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family pr...    55   3e-08
At1g65520.1 68414.m07434 enoyl-CoA hydratase/isomerase family pr...    55   4e-08
At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t...    52   2e-07
At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family pr...    52   4e-07
At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family pr...    44   6e-05
At1g02790.1 68414.m00235 exopolygalacturonase / galacturan 1,4-a...    36   0.015
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro...    34   0.062
At4g32910.1 68417.m04683 expressed protein                             31   0.76 
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr...    31   0.76 
At2g36450.1 68415.m04474 AP2 domain-containing protein low simil...    29   3.1  
At1g66600.1 68414.m07568 WRKY family transcription factor contai...    28   4.1  
At2g42570.1 68415.m05268 expressed protein                             28   5.4  
At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase sm...    28   5.4  
At2g44610.1 68415.m05553 Ras-related GTP-binding protein, putati...    27   7.1  
At4g14905.2 68417.m02290 kelch repeat-containing F-box family pr...    27   9.4  
At4g14905.1 68417.m02289 kelch repeat-containing F-box family pr...    27   9.4  
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    27   9.4  

>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 40/137 (29%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
 Frame = +2

Query: 131 LTVDNEGIAVLTMQRPPVNSLNLELLQDISKSLDD-VGKNKSKGMILASSSPTVFSAGLD 307
           + V  +G+AV+T+  PPVNSL+ ++L ++  + ++ + +N  K +++  +    FS G D
Sbjct: 11  MEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR-FSGGFD 69

Query: 308 IM---EMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFSLSCEYRVM 478
           I    EM K ++K  +  + ++  +   L  +  P+ AAI+G A  GG   +++C  R+ 
Sbjct: 70  ISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARIS 129

Query: 479 ANGKYSIGLNETALGIV 529
           A     +GL E  LG++
Sbjct: 130 APAA-QLGLPELQLGVI 145


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
 Frame = +2

Query: 101 MSAKAGPLVDLTVDNEGIAVLTMQRPPVNSLNLELLQDISKSLDDVG-KNKSKGMILASS 277
           M+ K G  V + V N+G+AV+T+  PPVNSL   ++  + +   D   +N  K ++L  +
Sbjct: 1   MAKKIG--VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGN 58

Query: 278 SPTVFSAGLDI---MEMYKP-DLKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGC 445
           +   FS G DI    +++K  DL        +++ V   +  S  P  AA+ G A  GG 
Sbjct: 59  NGR-FSGGFDINVFQQVHKTGDLSLMPE--VSVELVCNLMEDSRKPVVAAVEGLALGGGL 115

Query: 446 LFSLSCEYRVMANGKYSIGLNETALGIV 529
             +++C  RV A  K  +GL E  LG++
Sbjct: 116 ELAMACHARVAA-PKAQLGLPELTLGVI 142


>At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family
           protein similar to 3-hydroxybutyryl-CoA dehydratase
           (Crotonase) from Clostridium acetobutylicum [SP|P52046],
           FadB1x (enoyl-CoA hydratase) from Pseudomonas putida
           [GI:13310130]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 265

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
 Frame = +2

Query: 122 LVDLTVDNEGIAVLTMQRPP-VNSLNLELLQDISKSLDDVGKNKSKGMILASSSPTVFSA 298
           L+ +  ++ GIAV+T+ RP  +NSL   ++ D++K+  D+  ++S  +++ + S   F +
Sbjct: 9   LIQVKKESGGIAVITINRPKSLNSLTRAMMVDLAKAFKDMDSDESVQVVIFTGSGRSFCS 68

Query: 299 GLDIM---EMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFSLSCEY 469
           G+D+     ++K D+K  ET      D  +++     P   AING A   G   +L+C+ 
Sbjct: 69  GVDLTAAESVFKGDVKDPET------DPVVQMERLRKPIIGAINGFAITAGFELALACDI 122

Query: 470 RVMANG 487
            V + G
Sbjct: 123 LVASRG 128


>At1g65520.1 68414.m07434 enoyl-CoA hydratase/isomerase family
           protein low similarity to enoyl-CoA hydratase
           [Escherichia coli] GI:2764828, carnitine racemase
           SP|P31551 [Escherichia coli]; contains Pfam profile
           PF00378 enoyl-CoA hydratase/isomerase family protein
          Length = 240

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
 Frame = +2

Query: 191 LNLELLQDISKSLDDVGKNKS--KGMILASSSPTVFSAGLDIMEMYKPDLKRAETFWTAL 364
           LN  LL  +  +++ +  + S  + +++ +S    FS G D+  + + +   +      L
Sbjct: 23  LNPTLLDSLRSTINQIRSDPSFSQSVLITTSDGKFFSNGYDLA-LAESNPSLSVVMDAKL 81

Query: 365 QDVWLKLYGSSFPTAAAINGHAPAGGCLFSLSCEYRVMANGKYSIGLNETALGIVAPRWF 544
           + +   L     PT AA+ GHA A GC+ ++S +Y +M   +  + ++E  + ++ P WF
Sbjct: 82  RSLVADLISLPMPTIAAVTGHASAAGCILAMSHDYVLMRRDRGFLYMSELDIELIVPAWF 141

Query: 545 M 547
           M
Sbjct: 142 M 142


>At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to
           AU-binding protein/Enoyl-CoA hydratase [Homo sapiens]
           GI:780241, [Mus musculus]GI:6840920; contains Pfam
           profile PF00378 enoyl-CoA hydratase/isomerase family
           protein
          Length = 229

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
 Frame = +2

Query: 203 LLQDISKSLDDVGK-NKSKGMILASSSPTVFSAGLDIMEMYKPDLKRAETFWTALQDVWL 379
           +L+ +  + + + + N ++ +++ S  P VF AG D+ E          T+  +L+ ++ 
Sbjct: 1   MLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60

Query: 380 KLYGSSFPTAAAINGHAPAGGCLFSLSCEYRVMANGKYSIGLNETALGIV 529
            +   S PT AAI G A  GG   +L+C+ R+        GL ET L I+
Sbjct: 61  FIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAV-FGLPETGLAII 109


>At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family
           protein low similarity to PhaB [Pseudomonas putida]
           GI:3253198, SP|P31551 Carnitine racemase {Escherichia
           coli}; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 238

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
 Frame = +2

Query: 134 TVDNEG-IAVLTMQRPPVNSLNLELLQDISKSLDDVGKNKSKGMILASSSP-TVFSAGLD 307
           T++  G + +LT+     +  + + +  +   L+      +KG +L ++     FS G D
Sbjct: 3   TLEKRGDLFLLTLTGEDEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFFSNGFD 62

Query: 308 IMEMYKPD---LKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFSLSCEYRVM 478
           +          +KR      + + V   L     PT AA+NGHA A G +F+LS +Y  M
Sbjct: 63  LAWAQSAGHGAIKRMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFALSHDYVFM 122

Query: 479 ANGKYSIGLNETALGIVAPRWF 544
              +  + ++E  +G+  P +F
Sbjct: 123 RKDRGVLYMSEVDIGLPVPDYF 144


>At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family
           protein low siimilarity to 2-cyclohexenylcarbonyl CoA
           isomerase [Streptomyces collinus] GI:8133118, enoyl-CoA
           isomerase [Escherichia coli] GI:2764829; contains Pfam
           profile PF00378 enoyl-CoA hydratase/isomerase family
           protein
          Length = 240

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
 Frame = +2

Query: 134 TVDNEG-IAVLTMQRPPVNSLNLELLQDISKSLDDVGKNKSKGMIL-ASSSPTVFSAGLD 307
           T++  G + +LT+     +  + + +  I   L+      ++G IL  +++   FS G D
Sbjct: 3   TLEKRGDLFLLTLTGDGEHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFFSNGFD 62

Query: 308 IMEMYKPDLK-----RAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFSLSCEYR 472
           +        K     R      + + V   L     PT AA+NGHA A G + +LS +Y 
Sbjct: 63  LAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILALSHDYV 122

Query: 473 VMANGKYSIGLNETALGIVAPRWF 544
            M   +  + ++E  +G+  P +F
Sbjct: 123 FMRKDRGVLYMSEVDIGLSMPDYF 146


>At1g02790.1 68414.m00235 exopolygalacturonase / galacturan
           1,4-alpha-galacturonidase (PGA3) / pectinase identical
           to SP|P49062 Exopolygalacturonase clone GBGE184
           precursor (EC 3.2.1.67) (ExoPG) (Galacturan
           1,4-alpha-galacturonidase) {Arabidopsis thaliana}
          Length = 422

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = +2

Query: 254 KGMILASSSPTVFSAGLDIMEMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAI-NGHA 430
           +G+   S +PTV+    DI +          TF  A  + W+++  S  P    +  G  
Sbjct: 40  RGLAANSGNPTVY----DITKFGAVGDGSTNTF-KAFLNTWIQVCDSPVPATLLVPKGTF 94

Query: 431 PAGGCLFSLSCEYRVMANGKYSIG-LNETALGIVAPRWFMYSMVEHDLEQGSG 586
            AG  +F+  C+ +V  N    IG +  T  G   P WF++  V++ +  G+G
Sbjct: 95  LAGPVIFAGPCKSKVTVN---VIGTIIATTSGYATPEWFLFERVDNLVLTGTG 144


>At1g60550.1 68414.m06816 naphthoate synthase, putative /
           dihydroxynaphthoic acid synthetase, putative / DHNA
           synthetase, putative contains similarity to MENB from
           Escherichia coli [SP|P27290], Bacillus subtilis
           [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 337

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
 Frame = +2

Query: 143 NEGIAVLTMQRPPV-NSLNLELLQDISKSLDDVGKNKSKGMILASSSPT-VFSAGLD-IM 313
           +EGIA +T+ RP   N+   + ++++ ++ +D   + S G+I+ +   T  F +G D  +
Sbjct: 84  DEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAL 143

Query: 314 EMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFSLSCEYRVMAN 484
                     +     + D+ +++     P  A + G+A  GG +  + C+  + A+
Sbjct: 144 RTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAAD 200


>At4g32910.1 68417.m04683 expressed protein
          Length = 716

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 200 ELLQDISKSLDDVGKNKSKGMILASSSPTVFSAGLDIMEMYKPDLKRA 343
           +L   + KSL D    + +G++    S +  S GLD +  Y+ D KR+
Sbjct: 564 QLFDSVGKSLSDESLKQWEGLVELLGSESQISGGLDFLHKYR-DFKRS 610


>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 387

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
 Frame = +2

Query: 152 IAVLTMQRP-PVNSLNLELLQDISKSLDDVGKNKSKGMILASSSPTVFSAGLDIMEMYKP 328
           + + T+ RP  +N ++ E++  +++ L+   K+    +IL   +   FSAG D+   Y  
Sbjct: 21  VRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGGDLKVFYHG 80

Query: 329 DLKRAETFWTALQDVWLKLYGSSF--PTAAAINGHAPAGGCLFSLSCEYRVMANGKYSIG 502
              +        +  WL  +  ++     + +NG +  GG    +  ++ V+   K    
Sbjct: 81  QESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFSVVTE-KTVFA 139

Query: 503 LNETALGIVAPRWFMY 550
             E + G      F Y
Sbjct: 140 TPEASFGFHTDCGFSY 155


>At2g36450.1 68415.m04474 AP2 domain-containing protein low
           similarity to DREB1B GI:3738226 from [Arabidopsis
           thaliana]; contains Pfam profile PF00847: AP2 domain
          Length = 184

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 149 GIAVLTMQRPPVNSLNLELLQDISKSLDDVGKNKSKGMILASSSPTVFSAGLD 307
           G+A +       N +N  + +D+   + +V  N ++GM+L+   PTVF A  D
Sbjct: 118 GVACMNSSYDNTN-MNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYD 169


>At1g66600.1 68414.m07568 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 241

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 65  NNVKSAVPNCRLMSAKAGPLVDLTVDNEGIAVLTMQRP 178
           N +K+ + NC++ S    PL++  +D+  +A+ ++  P
Sbjct: 21  NILKTVLDNCKVSSVSTEPLINTILDSFSLALSSVNSP 58


>At2g42570.1 68415.m05268 expressed protein
          Length = 367

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
 Frame = +2

Query: 71  VKSAVPNCRLMSAKAGPLVDLTVDNEGIAVLTMQRPPVNSLNLELLQDISKSLDDVGK-N 247
           + S VPN R    +   L  LT +  G+ +L  +   +  LN+E +  + K LD + + N
Sbjct: 135 IHSWVPNTRYTLIRQKGLASLTFEEYGVTLLLYRTQFLVDLNVEKVGRVLK-LDSIKQGN 193

Query: 248 KSKGM-ILASSS-----PTVFSAGLDIME----MYKPDLKRAETFWTALQD--VWLKLYG 391
             +GM +L  +S      T      D ME    +YK D+ R   F+  +     W+  Y 
Sbjct: 194 MWRGMDVLIFNSWHWWTHTEHIQPWDYMEDGNRLYK-DMNRLVAFYKGMTTWARWVNAYV 252

Query: 392 SSFPTAAAINGHAP 433
               T    NG +P
Sbjct: 253 DPSKTKVFFNGVSP 266


>At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase GI:4151068 from
           [Nicotiana tabacum]
          Length = 816

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 29/104 (27%), Positives = 49/104 (47%)
 Frame = +2

Query: 275 SSPTVFSAGLDIMEMYKPDLKRAETFWTALQDVWLKLYGSSFPTAAAINGHAPAGGCLFS 454
           +SPT+F+AG       +P L  +  F   ++D  ++    +    A I+    AGG   S
Sbjct: 201 ASPTLFNAGTP-----RPQL--SSCFLVCMKDDSIEGIYETLKECAVIS--KSAGGIGVS 251

Query: 455 LSCEYRVMANGKYSIGLNETALGIVAPRWFMYSMVEHDLEQGSG 586
           +   + + A G Y  G N T+ GIV P   +++     ++QG G
Sbjct: 252 V---HNIRATGSYIRGTNGTSNGIV-PMLRVFNDTARYVDQGGG 291


>At2g44610.1 68415.m05553 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein GI:623586 from [Nicotiana
           tabacum] ; contains an ADP-ribosylation factors family
           signature for proteins involved in protein trafficking
          Length = 208

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 165 VSTAIPSLSTVKSTNGPALADINLQLGTADLTL 67
           ++ A+P + T+ ST    + D+NL+   A+ +L
Sbjct: 166 IAAALPGMETLSSTKQEDMVDVNLKSSNANASL 198


>At4g14905.2 68417.m02290 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 300 VLI*WKCTNQI*SEQKRFGLHYKMYGLSYMAQAFLLQLPSMVTHQPEGAYFPYRASTE*W 479
           VL  + C NQI +     G+    +GL  + +        MV H    A    ++ TE W
Sbjct: 271 VLYGFYCMNQILAYDLVVGMGTVFWGLEGLPEGLQSCTGRMVNHGGRLAILFKKSPTEIW 330

Query: 480 RTE 488
           RTE
Sbjct: 331 RTE 333


>At4g14905.1 68417.m02289 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 300 VLI*WKCTNQI*SEQKRFGLHYKMYGLSYMAQAFLLQLPSMVTHQPEGAYFPYRASTE*W 479
           VL  + C NQI +     G+    +GL  + +        MV H    A    ++ TE W
Sbjct: 271 VLYGFYCMNQILAYDLVVGMGTVFWGLEGLPEGLQSCTGRMVNHGGRLAILFKKSPTEIW 330

Query: 480 RTE 488
           RTE
Sbjct: 331 RTE 333


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 162  STAIPSLSTVKSTNGPALADINLQLGTADLTLLIK*RKGSI 40
            S  + S+ + K  N P LA +NL+LGT    L      GSI
Sbjct: 1695 SDILASMVSSKGANVPLLARVNLKLGTWQWALSSGLNDGSI 1735


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,623,306
Number of Sequences: 28952
Number of extensions: 256763
Number of successful extensions: 625
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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