Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H22
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   3.5  
02_02_0391 - 9646256-9646528                                           28   3.5  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    28   3.5  
06_03_1167 + 28111923-28113218                                         27   6.0  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    27   6.0  
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185...    27   6.0  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    27   8.0  
07_03_0475 + 18544637-18544772,18544925-18545031,18545114-185452...    27   8.0  

>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 400 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 254
           +S +G +   FK+ +++E   K   +   L  EDG++++  K  DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647


>02_02_0391 - 9646256-9646528
          Length = 90

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 65  ENVSLQDK--RCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKI 184
           +++ ++DK  + +   CG  +KG S+  D+D+   ++E Y +
Sbjct: 33  QHIDIRDKPRQTQYGACGGQQKGSSIIFDLDEFIFEEEDYPV 74


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +2

Query: 14  PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKIGKD 193
           PS +G    RA      +  +  DK+ R+    A   G  +    D + VDD+  +   +
Sbjct: 242 PSPNGRGRKRAPPKVSNDPAAGSDKKPRKRAKKAAAAGSKVTVPADVIIVDDDVNQPSSN 301

Query: 194 YDVEANIDXYTNKKAV 241
            D ++N D    K AV
Sbjct: 302 TDAQSNADDDLKKAAV 317


>06_03_1167 + 28111923-28113218
          Length = 431

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +2

Query: 59  VTENVSLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANI 214
           V  N +  D  C RS        ++  +  D+ N   E   +   YDVEA I
Sbjct: 12  VWNNAAFDDSSCSRSAWLPQSPAVAAVRKGDKENHRPEVVDVAAGYDVEAEI 63


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 328 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 212
           S FP  + E GE+ V GK+ D +       SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538


>04_04_0477 +
           25517060-25517152,25517263-25517382,25518203-25518506,
           25518944-25519305,25519401-25519575,25520510-25520574,
           25520725-25520790,25521275-25521350,25521813-25521922
          Length = 456

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
 Frame = +2

Query: 44  AIQCGVTENVSLQD----KRCRRSVCGAPE-KGLSLFQDVDQVNVDDEYYKIGKDYDVEA 208
           A+Q  VT  V L+D    KR  +++  AP+  G  +F D+ ++  D+  Y  G DY    
Sbjct: 99  ALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVFSDIFKLICDEYDYYEGADYSHTD 158

Query: 209 NI---DXYTNKKAVEEF 250
           NI   D +      E F
Sbjct: 159 NILQMDAHNTMTETENF 175


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 353 SRTSGKEQ*PLPLAFGRRWRTHSTWED 273
           SRT G    P P    RRWR H   +D
Sbjct: 404 SRTRGARNSPPPPTSARRWRPHPPADD 430


>07_03_0475 +
           18544637-18544772,18544925-18545031,18545114-18545295,
           18545467-18545599,18545708-18545920
          Length = 256

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 221 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIAL 337
           Y NK  V    K+      P Y EF I+YQ+  ++ IA+
Sbjct: 147 YPNKNIV---FKITESSNFPNYLEFEIWYQQGNQDIIAV 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,229,219
Number of Sequences: 37544
Number of extensions: 190492
Number of successful extensions: 439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)