Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H22
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.88 
SB_29641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)                       28   3.6  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   6.2  
SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)         27   6.2  
SB_13944| Best HMM Match : Citrate_synt (HMM E-Value=0)                27   6.2  
SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)                    27   8.2  

>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 119 EKGLSLFQDVDQVNVDDEYYKIGKDY-DVEAN-IDXYTNKKAVEEFLKLYRI 268
           E+ +SLF+DVD+   D+ Y KI   Y D+  + ID Y    +   F KL ++
Sbjct: 93  ERCISLFKDVDKYKHDERYLKIWIQYADLCTDPIDVYDYMHSQSMFSKLAKL 144


>SB_29641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 59  VTENVSLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKIGKDYD 199
           V  +V  QDK    +VCG+  +G +   D+D +    +Y    ++YD
Sbjct: 90  VLVHVKKQDKNLTATVCGSFRRGATSSGDIDILLSHPDYTSSSQNYD 136


>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
          Length = 62

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 50  QCGVTENVSLQDKRCRRSVCG 112
           +C + +NV   D+ CRRS CG
Sbjct: 29  KCHMEKNVIFDDRACRRSRCG 49


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 12  VLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVYPFS 140
           +++LA ++A V   +V+PK    K +D+D  ++E +  VY  S
Sbjct: 618 LVILAMIVAAVVIIIVAPKCAKAKVRDMDKSWLENE-VVYKIS 659


>SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)
          Length = 503

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 92  CRRSVCGAPEKGLSLFQDVDQVNVDDEYYK-IGKDYDVEANIDXYTNKKAVEEFL 253
           C  S CG  +KG+S F  V  +NV     K  G     E+++   T  K ++E L
Sbjct: 126 CSYSRCGRTDKGVSAFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKEIL 180


>SB_13944| Best HMM Match : Citrate_synt (HMM E-Value=0)
          Length = 297

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = +2

Query: 110 GAPEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTN--KKA----VEEFLKLYRIG 271
           G  +  L + + +++V ++DEY+K    Y    N+D Y+    +A    VE F  L+ IG
Sbjct: 201 GVDDPLLDIAKQLEKVALEDEYFKARNLY---PNVDFYSGIIYRAMGIPVEMFTVLFAIG 257

Query: 272 YLP 280
            LP
Sbjct: 258 RLP 260


>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
          Length = 708

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 158 NVDDEYYKIGKDYDVEANIDXYTNKKAVE 244
           N D+EY K   +Y+VE   D   N++A E
Sbjct: 100 NDDEEYMKDMPEYNVETKADYKGNEEAAE 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,787
Number of Sequences: 59808
Number of extensions: 238264
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)