Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H22
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 32 0.15
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 29 1.8
AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical... 29 1.8
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 28 2.4
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 28 2.4
U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine rece... 27 5.5
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 27 5.5
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 7.2
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 7.2
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 7.2
AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical ... 26 9.5
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 32.3 bits (70), Expect = 0.15
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +2
Query: 119 EKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXY----TNKKAVEEFLKLYR--IGYLP 280
E G S+ DV ++++DD+Y+ +G +D + D + AV F L+R +LP
Sbjct: 2538 EDGDSMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLP 2597
Query: 281 KY 286
Y
Sbjct: 2598 PY 2599
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 299 WRTHSTWEDN-RFCTISRILQQLSYWCSXRC 210
WRT + E + +F +SRIL+Q + W S C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572
>AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical
protein Y62E10A.16 protein.
Length = 496
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 324 RLLLFSTCSTMLKTLKPSTRVPLSLV 401
R+ F TCS +KT+K +PLS+V
Sbjct: 290 RIEQFLTCSETIKTVKSDALIPLSIV 315
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 167 DEYYKIGKDYDVEANIDXYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHL 346
D YY + + + V +TN V+E +K Y P + ++S EEAIA FH
Sbjct: 65 DTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHK 112
Query: 347 FYYAKD 364
+Y K+
Sbjct: 113 YYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 167 DEYYKIGKDYDVEANIDXYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHL 346
D YY + + + V +TN V+E +K Y P + ++S EEAIA FH
Sbjct: 65 DTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHK 112
Query: 347 FYYAKD 364
+Y K+
Sbjct: 113 YYEGKE 118
>U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine
receptor, class v protein7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -1
Query: 397 SESGTLVEGFKVF-SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGV 221
+ + TL E F S+V V S F +L+ E+++L + ++V F+ F IG+
Sbjct: 2 ASNATLPEWFDPLESVVSTVFMLGS-FVTILLYFVEILILVTLRNTVYKGMFYQIFTIGI 60
Query: 220 VIDV 209
+IDV
Sbjct: 61 IIDV 64
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 20 SSGAHCPRAIQCGVT 64
+SG HCPR + CG T
Sbjct: 28 TSGDHCPRVLSCGHT 42
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 74 SLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKI 184
++QD C R G+ FQ D+V+ EY KI
Sbjct: 180 AMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKI 216
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 74 SLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKI 184
++QD C R G+ FQ D+V+ EY KI
Sbjct: 180 AMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKI 216
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 74 SLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKI 184
++QD C R G+ FQ D+V+ EY KI
Sbjct: 180 AMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKI 216
>AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical
protein W03F8.2 protein.
Length = 448
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 263 RIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKDFET 373
+I +P+ +FSI +KLRE +H F+ +D +T
Sbjct: 158 KISIVPEKEDFSILEKKLRE--FNFYHGFFPREDLQT 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,234
Number of Sequences: 27780
Number of extensions: 168494
Number of successful extensions: 452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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