Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H21
         (241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   1.3  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    24   3.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    24   3.1  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    23   4.1  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         23   4.1  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    23   7.1  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    23   7.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    23   7.1  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 122 LTSTAAFRYNSLLPAIVLVVPL 57
           L ST  F Y  LLP  V V+PL
Sbjct: 267 LESTKGFVYAYLLPLCVFVIPL 288


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 3   QLKRMLDLKVNPVDGLSSKWDYENNRWK*TIISKSCS 113
           + ++ LDL V  +D + S +  +N   K  +IS SC+
Sbjct: 63  KFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVISCSCT 99


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 230 FFWLESHLLSYRYFINLM**NN*FLHDVRGRSHGRDLTST 111
           FFW+    L  +YF N +      LH +   S GR ++ +
Sbjct: 521 FFWIARMALLCKYFSNELPFKEIILHPLVRDSEGRKMSKS 560


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 2   AAQAHAGPQGEPGGRALLQVGLREQSLEVNYYI*KL 109
           A+Q++ GP     G+A+L++  RE+S  +  ++ KL
Sbjct: 460 ASQSYIGPINSSIGKAILEMS-REESAPLVMHVTKL 494


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 239 FFFFFWLESHLLSYR 195
           FFF FWL + +L +R
Sbjct: 77  FFFLFWLLNFILFFR 91


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 76  IAGSKLLYLKAAVEVRSRPWLRPRTSCRNQLFYYIRLIKY 195
           +AG+K    K  ++  SR W  P      Q+  +  LI+Y
Sbjct: 583 VAGTKRSLGKVGLDNPSRQWDYPNGWSPQQILAWYGLIRY 622


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 193 ILLILCNKTIDFYMTC 146
           ILL++ N  I+FY  C
Sbjct: 276 ILLVVFNSVIEFYKRC 291


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 142 PRTSCRNQLFYYI 180
           PR  C N LFY++
Sbjct: 704 PRRICSNSLFYFV 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,454
Number of Sequences: 5004
Number of extensions: 15749
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)