Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H21
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0222 - 16565885-16566244,16568069-16568227 32 0.056
10_07_0029 + 12031711-12032464,12044289-12044386 27 2.1
08_02_0612 - 19327751-19328026 26 3.7
05_05_0110 + 22470869-22470920,22471044-22471146,22473261-224733... 26 4.9
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 26 4.9
12_02_1207 + 26995852-26996568 25 6.5
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 25 6.5
07_01_0469 - 3552409-3553368 25 6.5
12_02_1208 - 27016400-27017176 25 8.5
09_04_0383 + 17141534-17142046 25 8.5
04_01_0244 - 3194141-3195091,3195301-3195312 25 8.5
01_01_0416 + 3128433-3128573,3128967-3129455 25 8.5
>02_03_0222 - 16565885-16566244,16568069-16568227
Length = 172
Score = 32.3 bits (70), Expect = 0.056
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 23 PQGEPGGRALLQVGLREQSLEVNYYI*KLQLRLGRDRGSARARHVEIN 166
P+G PG +V L E+ +V Y+ +L G D GSA R +EIN
Sbjct: 71 PKGLPGWDEAEKVHLGEELADVLLYLVRLSDMCGVDLGSAALRKLEIN 118
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 83 PAIVLVVPLGGEPVHRVHLEVQ 18
P + PL GE HRV LEVQ
Sbjct: 33 PEYTTIPPLSGELPHRVRLEVQ 54
>08_02_0612 - 19327751-19328026
Length = 91
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 5 AQAHAGPQGEPGGRALLQVGLREQSLE 85
A H G G+ GGR+++ V + E++++
Sbjct: 17 AAGHGGGGGDGGGRSIISVSILEKTMK 43
>05_05_0110 +
22470869-22470920,22471044-22471146,22473261-22473358,
22473430-22473530,22474052-22474129,22474578-22474655
Length = 169
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 9 KRMLDLKVNPVDGLSSKWDYENN--RWK*TII 98
K++ DL NPVDG S+ ++N W+ TII
Sbjct: 14 KQLKDLAKNPVDGFSAGLVDDSNVFEWQVTII 45
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 15 MLDLKVNPVDGLSSKWDYENNRWK*TIISKSCS 113
+LDL N + G W +EN + I++ SC+
Sbjct: 162 LLDLSSNQITGAIPNWIWENWKGHLNILNLSCN 194
>12_02_1207 + 26995852-26996568
Length = 238
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 28 R*TRWTGSPPSGTTRTIAGSKLLYLKAAVEVRSRPWLRPRTSC 156
R T W G+ P G R G AA +R W PRT C
Sbjct: 34 RYTVWPGALPGGGVRLDPGKSWTLNVAAGTKAARIW--PRTGC 74
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 1 RSSSACWTSR*TRWTGSPPSGTTR 72
R+ S+ WT R +R+ G+P T+R
Sbjct: 66 RTPSSTWTPRPSRYGGTPSISTSR 89
>07_01_0469 - 3552409-3553368
Length = 319
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 83 PAIVLVVPLGGEPVHRVHLEV 21
P V PL GE HRV LEV
Sbjct: 33 PEYTTVPPLSGELPHRVRLEV 53
>12_02_1208 - 27016400-27017176
Length = 258
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 34 TRWTGSPPSGTTRTIAGSKLLYLKAAVEVRSRPWLRPRTSC 156
T W G+ P G R G AA +R W PRT C
Sbjct: 42 TVWPGALPGGGARLDPGQSWSISVAAGTPAARIW--PRTGC 80
>09_04_0383 + 17141534-17142046
Length = 170
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 46 GSPPSGTTRTIAGSKLLYLKAAVEVRSRP 132
G P G+T +AGS L L +A+ S P
Sbjct: 114 GQPAQGSTDVLAGSASLLLSSAICCDSLP 142
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 83 PAIVLVVPLGGEPVHRVHLEV 21
P + PL GE HRV LEV
Sbjct: 37 PEYTTIPPLSGELPHRVRLEV 57
>01_01_0416 + 3128433-3128573,3128967-3129455
Length = 209
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 40 WTGSPPSGTTRTIAGSKLLYLKAAVEVRSRP 132
+TG + T K LY+KA++ RP
Sbjct: 89 FTGDAATAATTVAGNHKTLYIKASISCDDRP 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,615,145
Number of Sequences: 37544
Number of extensions: 109992
Number of successful extensions: 260
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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