Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H21
         (241 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.77 
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_47456| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)                 25   7.2  
SB_37567| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_56847| Best HMM Match : Kelch_1 (HMM E-Value=0)                     25   9.5  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  
SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)               25   9.5  
SB_6253| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   RSSSACWTSR*TRWTGSPPSGTTRTIAG 84
           ++ +A WTSR   WT   P  T+RT  G
Sbjct: 190 KTETAEWTSRTPEWTSRTPEWTSRTSNG 217


>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 34  TRWTGSPPSGTTRTIAGSKLLYLKAAVEVRSRPWLRP 144
           TRW  +P +G    +AG ++L   A     ++ W  P
Sbjct: 530 TRWKRNPDTGQPLVLAGKRVLEFVAIQRSDTKEWAIP 566


>SB_47456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 57 KWDYENNRWK 86
          KWD +NNRWK
Sbjct: 33 KWDNDNNRWK 42


>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
          Length = 342

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 226 SGWNHIYYLTDILLILCNKTIDFYMTCAGGATVAT*PQLQLLDIIVYFQRLFS*SHL 56
           S W H +++TD      + TI   + C   A VA    L +L      +RL + S+L
Sbjct: 7   SSWEHCFFITDFEFNKLSNTITSVLNCV-SAPVALFGNLGVLLAFCLSRRLRTPSNL 62


>SB_37567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 205 YLTDILLILCNKTIDFYMTCAGGATVAT*PQLQLLD-IIVYFQ 80
           YLTD   +L       Y T  GG+ V + P  +L++ +I  FQ
Sbjct: 2   YLTDFSALLAMLLFIMYRTGRGGSPVTSRPGSKLINHVIASFQ 44


>SB_56847| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 201

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 4   SSSACWTSR*TRWTGSPPSGTTRTIAGSKLLY-LKAAVEVRSRPWLRPRTSCRN 162
           SS  C++     WT  P   T R+ AG  + Y +  A+     P +R    C N
Sbjct: 70  SSVECYSPANNEWTLVPEMSTRRSGAGVGVAYGVLYAIGGHDGPHVRKSVECFN 123


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 22  TSR*TRWTGSPPSGTTRTIAGSKLLYLKAAVEVRSR-PWLRPRTSCRNQ 165
           ++R TRW    PS TTR  A ++      +  +RS   +LR R     Q
Sbjct: 768 SARDTRWIRISPSHTTRCYANTQYTLHTGSKRIRSHCAFLRLRRFAHEQ 816


>SB_8385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 4   SSSACWTSR*TRWTGSPPSGTTRTIAGSKLLY-LKAAVEVRSRPWLRPRTSCRN 162
           SS  C++     WT  P   T R+ AG  + Y +  A+     P +R    C N
Sbjct: 449 SSVECYSPANNEWTLVPEMSTRRSGAGVGVAYGVLYAIGGHDGPHVRKSVECFN 502


>SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)
          Length = 404

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   RSSSACWTSR*TRWTGSPPSGTTRTIAGSKLL 96
           ++++ACW     +  G PP G    ++ +KLL
Sbjct: 155 QTATACWRLDLAQPVGPPPRGLFGALSSTKLL 186


>SB_6253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   RSSSACWTSR*TRWTGSPPSGTTRTIAGSKLL 96
           ++++ACW     +  G PP G    ++ +KLL
Sbjct: 156 QTATACWRLDLAQPVGPPPRGLFGALSSTKLL 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,378,181
Number of Sequences: 59808
Number of extensions: 122724
Number of successful extensions: 262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 16,821,457
effective HSP length: 57
effective length of database: 13,412,401
effective search space used: 295072822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)