Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H21
(241 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 29 0.57
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 27 1.7
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 27 2.3
At3g45100.2 68416.m04868 N-acetylglucosaminyl-phosphatidylinosit... 26 4.0
At3g45100.1 68416.m04867 N-acetylglucosaminyl-phosphatidylinosit... 26 4.0
At3g23430.1 68416.m02953 phosphate transporter, putative (PHO1) ... 26 4.0
At5g03100.1 68418.m00258 F-box family protein contains F-box dom... 25 7.0
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil... 25 7.0
At1g79220.1 68414.m09236 mitochondrial transcription termination... 25 7.0
At1g47390.1 68414.m05246 F-box family protein contains F-box dom... 25 7.0
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 25 9.3
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 25 9.3
At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-contain... 25 9.3
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 28.7 bits (61), Expect = 0.57
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 220 WNHIYYLTDILLILCNKTIDFYMTCAGGATVAT*PQLQLLDIIVYFQR---LFS*SHLEE 50
WNH++ +T IL + + FY+ GG + + L + +F+ +F H+
Sbjct: 51 WNHVFLITSILALFLD-PFYFYVPYVGGPACLS-IDISLAATVTFFRTVADIFHLLHIFM 108
Query: 49 SPSTGFTLRSS 17
T F RSS
Sbjct: 109 KFRTAFVARSS 119
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 140 RSHGRDLTSTAAFRYNSLLPAIVLVVPLGGE-PVH 39
++ G DL + R N+LLP +VVPL P+H
Sbjct: 566 KAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLH 600
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
putative contains Pfam domain PF01851:
Proteasome/cyclosome repeat
Length = 1103
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 208 YYLTDILLILCNKTIDFYMTCAGGATVAT*PQLQLL 101
YY D L+ C DF+++ G TV+T +L L+
Sbjct: 805 YYYKDASLLFCVTFYDFFLSFHGINTVSTYDRLVLI 840
>At3g45100.2 68416.m04868 N-acetylglucosaminyl-phosphatidylinositol
biosynthetic protein, putative similar to PIG-A from Mus
musculus [gi:577723[, Homo sapiens [SP|P37287]; contains
Pfam glycosyl transferase, group 1 family protein domain
PF00534
Length = 447
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -1
Query: 238 FFF--FSGW-NHIYYLTDILLILCNKTI 164
FFF F G NHIYYL+ LL L +K +
Sbjct: 15 FFFPNFGGVENHIYYLSQCLLKLGHKVV 42
>At3g45100.1 68416.m04867 N-acetylglucosaminyl-phosphatidylinositol
biosynthetic protein, putative similar to PIG-A from Mus
musculus [gi:577723[, Homo sapiens [SP|P37287]; contains
Pfam glycosyl transferase, group 1 family protein domain
PF00534
Length = 447
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -1
Query: 238 FFF--FSGW-NHIYYLTDILLILCNKTI 164
FFF F G NHIYYL+ LL L +K +
Sbjct: 15 FFFPNFGGVENHIYYLSQCLLKLGHKVV 42
>At3g23430.1 68416.m02953 phosphate transporter, putative (PHO1)
identical to PHO1 protein [Arabidopsis thaliana]
GI:20069032; supporting cDNA gi|20069031|gb|AF474076.1|;
contains Pfam profiles PF03124: EXS family and PF03105:
SPX domain
Length = 782
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 130 PWLRPRTSCRNQLFYYIRL 186
PWLR RN+ FYY+ +
Sbjct: 689 PWLRDNLVLRNKNFYYLSI 707
>At5g03100.1 68418.m00258 F-box family protein contains F-box domain
Pfam:PF00646
Length = 307
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 220 WNHIYYLTDILLILCNK 170
W H++Y T + I+CN+
Sbjct: 41 WKHVWYETPSISIVCNR 57
>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase [Arabidopsis thaliana]
GI:3044214
Length = 664
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 43 TGSPPSGTTRTIAGSKLLYLKAAVEVR-SRPWLRP 144
+G PSGTT + +K L L+ + VR +R WL P
Sbjct: 447 SGKAPSGTTAYMGRAKHL-LQCSSGVRNARDWLNP 480
>At1g79220.1 68414.m09236 mitochondrial transcription termination
factor family protein / mTERF family protein weak
similarity to mtDBP protein [Paracentrotus lividus]
GI:4584695; contains Pfam profile PF02536: mTERF
Length = 399
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 124 SRPWLRPRTSCRNQLFYYI 180
SRP L PRT+ N+ F YI
Sbjct: 208 SRPTLIPRTNFNNEKFEYI 226
>At1g47390.1 68414.m05246 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +3
Query: 33 NPVDGLSSKW---DYENNRWK*TIISKSCS*G 119
N +D S W D+ +N WK T + SCS G
Sbjct: 154 NELDPTRSVWKIHDFASNSWKYTNLVMSCSSG 185
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 83 PAIVLVVPLGGEPVHRVHLEV 21
P + L V +GG+PV R+ +E+
Sbjct: 7 PNVFLDVSIGGDPVQRIVIEL 27
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 83 PAIVLVVPLGGEPVHRVHLEV 21
P + L V +GG+PV R+ +E+
Sbjct: 7 PNVFLDVSIGGDPVQRIVIEL 27
>At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF01852: START domain, PF00169:
PH domain
Length = 737
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 74 QSLEVNYYI*KLQLRLGRDRGSA 142
Q+LE+NY+ K + LG D GS+
Sbjct: 659 QALEINYFRGKNYIELGVDIGSS 681
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,203,323
Number of Sequences: 28952
Number of extensions: 84339
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,070,560
effective HSP length: 58
effective length of database: 10,391,344
effective search space used: 218218224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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