Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H20
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    28   0.83 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.4  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    27   1.9  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   3.3  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   4.4  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   5.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   5.8  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   7.7  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -2

Query: 393 STVVVLI-----SDLIGHRDCLQFLYVLSSFAHINVYVVMYVKDEAVAL 262
           S VV+LI     +DLI     L+FLY  +S A+I  Y   Y  D A +L
Sbjct: 676 SKVVILIYLGTENDLIALELLLKFLYEETSIAYIYTYDEFYKDDYATSL 724


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -2

Query: 375  ISDLIGHRDCLQFLYVLSSFAHINVYVVMYVKDEAVALIHGRYQWVYLSHSNIPLAFN 202
            +  L G  D  Q   VL       +  V+   D+ V  ++  Y W Y  H NI +A N
Sbjct: 1461 VMTLEGSTDLAQSTVVLPPLP-TEIADVLDAHDQRVLDLYKTYAWYYQKHGNIGVAAN 1517


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +1

Query: 283 DIHYDIY---VYVGERTKNVEKLKAISMANQIRDQDHNG 390
           DIHYD Y       E   NVE  K    A   +D D NG
Sbjct: 57  DIHYDDYDADAVDEEMPSNVELKKKSKKATPAKDSDFNG 95


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +1

Query: 220  VRVRQVDPLISSMNQGDCFILDIHYDIYVYV-GERTKNVEKLKAISMANQIRDQDHNGRG 396
            V V  V  ++  M + D  IL +HY  Y+++ G    +V+   +  M N +   D    G
Sbjct: 1049 VNVGSVKAVLELMERTDVPILSMHYAAYIHILGNVVSDVQAATSCYM-NALAKHD---AG 1104

Query: 397  RVELLAH-YSNEVDTL 441
             ++L A+ + +++++L
Sbjct: 1105 EIQLDANLFQSQIESL 1120


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = -2

Query: 234 LSHSNIPLAFNLEHTF----LGTRIRHDVVETGRVTPIQVL*CRCEVL*EVVTLVAHSLA 67
           LS    PL+ N +H       G +   +  E GR++P   L  + + L + +    H L 
Sbjct: 214 LSDQRYPLSSNFDHRGEAKGKGKQPLKNPQERGRISPSSPLNDQTKALMQRLLFFRHKLQ 273

Query: 66  VLYRRSTELVIEADSQDGSR 7
             +     L++E D  + S+
Sbjct: 274 KAFLSPDHLIVEEDFYNASK 293


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 26  SASMTSSVERRYNTARLWATRVTTSYSTSHLHYNTWMG 139
           +  ++S    + N   L ++ + TSYS S + Y++W G
Sbjct: 48  NTDLSSQFFEQTNNGSL-SSLIDTSYSNSQICYSSWQG 84


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = -3

Query: 248 ISGSTCLTRTFLSPLTWNIRFSA---PGFVTTWLKPDGLPPSKYCSADVKYCRKWL 90
           I+  T +   F++P   N   +    P F ++ +   G    K C AD K    WL
Sbjct: 167 ITPGTLIDENFMNPYESNYILTVVFDPNFFSSDISNQGTAEDKDCFADCKIGLSWL 222


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 220 HSSRL*PGTYVSRHPDSSRR 161
           HS    P  YV+ +P SSRR
Sbjct: 242 HSGAATPNAYVNNNPSSSRR 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,258
Number of Sequences: 5004
Number of extensions: 42770
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)