Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H20
(472 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 110 4e-25
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 55 3e-08
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 55 3e-08
U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 40 7e-04
U29488-9|AAA68778.1| 342|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical pr... 27 6.8
U23486-5|AAL38958.2| 326|Caenorhabditis elegans Serpentine rece... 27 6.8
Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 27 9.0
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 27 9.0
X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein. 27 9.0
>Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical
protein K06A4.3 protein.
Length = 475
Score = 110 bits (265), Expect = 4e-25
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Frame = +1
Query: 4 GAAAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNPSGFNHVVTN-PG 180
G AAI TV +DD GG QHRE +ES FL YF ++Y+ GG SG+ HV
Sbjct: 73 GVAAIKTVEIDDSLGGIPTQHREIQNYESPLFLSYFPDGIRYVSGGYESGYRHVDDQFKN 132
Query: 181 AEKRMFQVKGERNVRVRQVDPLISSMNQGDCFILDIHYDIYVYVGERTKNVEKLKAISMA 360
+ +F KG+RNVR +V+ ++S+N GD FILD+ D+YV++ + +E++K ++ A
Sbjct: 133 WKPHLFHCKGKRNVRCTEVECEVNSLNLGDVFILDLGKDLYVWMPPESGRLERIKGMARA 192
Query: 361 NQIRDQDHNGRGRVELL 411
I D + G +V +L
Sbjct: 193 KNIADHERMGIPKVHIL 209
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 193 MFQVKGERNV-RVRQVDPLISSMNQGD-CFILDIHYDIYVYVGERTKNVEKLKAISMANQ 366
+FQV E + V ++ GD ILD IYV+VG EK +A++ A
Sbjct: 361 LFQVSDESGLLHVEEIANFTQEDLDGDDVMILDALNSIYVWVGANANANEKKEALNTAKL 420
Query: 367 IRDQD 381
++D
Sbjct: 421 YLEKD 425
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
homolog protein.
Length = 1257
Score = 54.8 bits (126), Expect = 3e-08
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Frame = +1
Query: 10 AAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNP-SGFNHVVTNPGAE 186
+A+ VGL + RE M E+ FL F + Y++GG SGF + P
Sbjct: 570 SAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF-YTTEKPAHL 628
Query: 187 KRMFQ--VKGERNVRVRQVDPLISSMNQGDCFILDIHYDIYVYVGERTKNVEKLKAISMA 360
R+++ V G V + V + S++ CF+LD I+++ G +++ KA A
Sbjct: 629 TRLYRAGVNGTA-VEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSRITVSNKARLFA 687
Query: 361 NQIRDQDHNGRGRVE 405
++ +D G+ +E
Sbjct: 688 ERLNKRDRKGKSEIE 702
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 54.8 bits (126), Expect = 3e-08
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Frame = +1
Query: 10 AAILTVGLDDKFGGAAVQHREAMGHESNHFLQYFTSALQYLDGGNP-SGFNHVVTNPGAE 186
+A+ VGL + RE M E+ FL F + Y++GG SGF + P
Sbjct: 570 SAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF-YTTEKPAHL 628
Query: 187 KRMFQ--VKGERNVRVRQVDPLISSMNQGDCFILDIHYDIYVYVGERTKNVEKLKAISMA 360
R+++ V G V + V + S++ CF+LD I+++ G +++ KA A
Sbjct: 629 TRLYRAGVNGTA-VEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSRITVSNKARLFA 687
Query: 361 NQIRDQDHNGRGRVE 405
++ +D G+ +E
Sbjct: 688 ERLNKRDRKGKSEIE 702
>U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical
protein C10H11.1 protein.
Length = 918
Score = 40.3 bits (90), Expect = 7e-04
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +1
Query: 172 NPGAEKRMFQVKGERNVRVRQVDPLISSMNQGDCFILDIHYDIYVYVGERTKNVEKLKAI 351
+P + + QV+G +NV VR V P +SS+++ CF++ + Y G + +EK KA
Sbjct: 214 SPYPDVMLIQVRGSKNVDVRLVAPAMSSVHEVACFVVVHQKHLMKYEGLYSNILEKTKAS 273
Query: 352 SMANQI 369
+ +I
Sbjct: 274 QLCIEI 279
>U29488-9|AAA68778.1| 342|Caenorhabditis elegans Hypothetical
protein C56C10.10 protein.
Length = 342
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 255 GRYQWVYLSHSNIPLAFNLEHTFLGTRIRHDVVET 151
G +WV L NIPL N+ +L H+ ET
Sbjct: 231 GEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 265
>Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical
protein C33D9.5 protein.
Length = 472
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 277 ILDIHYDIYVYVGERTKNVEKLKAISMANQIRDQD---HNGRGRVELLAHYSNEVDTLKF 447
+LD H + ++ ++ LKA QI D D G L+ HY E+D LK
Sbjct: 160 VLDSHEAHRDELKKKDMEIDSLKADFQ--QIMDSDAFKEGGSTTKRLMEHYHIEIDNLKE 217
Query: 448 LHS 456
HS
Sbjct: 218 AHS 220
>U23486-5|AAL38958.2| 326|Caenorhabditis elegans Serpentine
receptor, class x protein114 protein.
Length = 326
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = -2
Query: 408 KFNTTSTVVVLISDLIGHRDCLQFLYVLSSFAHINVYVVMYVKDEAVALIHGRYQWVYLS 229
K N+ VV ++ + + C+ F+ ++N Y + + I G + W Y
Sbjct: 39 KLNSGFLVVCMVKSMANNIICMGFIAWPVPVTYLNFYFLPSFYNVLAGQIIGWFAWTYSP 98
Query: 228 HSNIPLAFN 202
+ I LA N
Sbjct: 99 TTQILLAGN 107
>Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical
protein DY3.2 protein.
Length = 566
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 343 KAISMANQIRDQDHNGRGRVELLAHYSNEVDTLK 444
+AI + ++RD + + G L+ +E+DTLK
Sbjct: 298 EAIHLRARVRDLETSSSGNASLIERLRSELDTLK 331
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 47 VERRYNTARLWATRVTTSYSTSHLHYNTWMGVTRPVSTTS*RIRVPRNV 193
V RR NT L + R S + YN W + RP++ P+ V
Sbjct: 40 VSRRRNTQLLASLRRCVSDPNVYKSYNHWKALLRPMTPIKSGAPTPKTV 88
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 47 VERRYNTARLWATRVTTSYSTSHLHYNTWMGVTRPVSTTS*RIRVPRNV 193
V RR NT L + R S + YN W + RP++ P+ V
Sbjct: 40 VSRRRNTQLLASLRRCVSDPNVYKSYNHWKALLRPMTPIKSGAPTPKTV 88
>X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein.
Length = 566
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 343 KAISMANQIRDQDHNGRGRVELLAHYSNEVDTLK 444
+AI + ++RD + + G L+ +E+DTLK
Sbjct: 298 EAIHLRARVRDLETSSSGNASLIERLRSELDTLK 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,691,846
Number of Sequences: 27780
Number of extensions: 257703
Number of successful extensions: 647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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