Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H19
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    81   7e-17
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   0.88 
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   2.0  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   2.0  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   2.7  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   2.7  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   3.6  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   8.2  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 81.0 bits (191), Expect = 7e-17
 Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
 Frame = +1

Query: 91  RAIAHLVGEN-IRGNITFTRLP-DGKVHVEGSIVGLPPG-HYGFHVHEKGDISGGCGSTG 261
           RA+A L G++ + G +TF ++  + +V V   +VG       GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 262 SHFNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
            HFNPE K HG  +   RHVGDLGN E D   + K    D  +++ GA+ I+
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSII 114


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 277 ENKE-HGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAI 396
           ENK  HG   D+     D  + E  K Y+SKI+ ID  + I
Sbjct: 85  ENKSVHGMTIDDIMDEEDRADQELSKVYTSKINTIDTSIPI 125


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 115 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPE-NKEH 291
           EN+   +  TR+ DGK  V      +  G + F  H+  ++    G   S+F+ E  + H
Sbjct: 30  ENVFMKLVMTRMLDGKTEVIPLTTDVHNGFWRFGRHKSCEVVLN-GPRVSNFHFEIYQGH 88

Query: 292 GHPSDENRHV 321
            + SDE+ +V
Sbjct: 89  RNDSDESENV 98


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 265 HFNPENKEHGHPSDENRH 318
           H N  + EH HPS E+ H
Sbjct: 380 HLNGSSGEHSHPSHEHTH 397


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 197 GGSPTIDP-STWTLPSGSRVNVILPLMFSPT 108
           GGS    P S + +PS S VN+  PL+ SP+
Sbjct: 395 GGSMPKGPNSIYKIPSASMVNLSSPLVTSPS 425


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 316 HVGDLGNAEFDKNYSSKIDMIDPHL 390
           HV + GN  FD  + S + ++D  L
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 256 TGSHFNPENKEHGHPSDENRHVGDLGN 336
           T  + +PE+   G PSD N     LGN
Sbjct: 462 THKNISPESSRFGTPSDPNSSSQSLGN 488


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 183 DRSFYVDLAVRQPSERNIASDVLP 112
           D S Y+  ++  PSE ++AS ++P
Sbjct: 213 DASSYITFSIPVPSEFSLASHIIP 236


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 148 LPDGKVHVEGSIVG-LPPGHYGFHVHEKGDISGGCGSTGSH 267
           L D  V  E S  G L    YG HV++ G+I+     +G+H
Sbjct: 286 LADFNVAQEWSTFGSLDLLSYGVHVYDNGNITSIVAVSGTH 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,044
Number of Sequences: 5004
Number of extensions: 33510
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)