Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H19
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 116 6e-27
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 107 4e-24
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 104 3e-23
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 96 1e-20
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 49 1e-06
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 32 0.16
03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240 29 1.5
10_02_0121 - 5513491-5513630,5514765-5514850,5515206-5515333 28 2.6
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 28 2.6
04_04_0588 - 26412487-26413887 28 2.6
05_01_0141 - 937428-937717,938483-938705 28 3.5
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 28 3.5
07_01_0297 - 2156960-2157736 27 4.6
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 27 6.0
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 27 6.0
05_01_0214 - 1615519-1616775 27 8.0
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 27 8.0
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 116 bits (280), Expect = 6e-27
Identities = 53/110 (48%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = +1
Query: 91 RAIAHLVG-ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
+A+A L E ++G I F++ DG V GS+ GL PG +GFHVH GD + GC STG H
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
FNP KEHG P DENRH GDLGN + + +++ D + +TGAH I+
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSII 112
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 107 bits (257), Expect = 4e-24
Identities = 46/101 (45%), Positives = 63/101 (62%)
Frame = +1
Query: 115 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHG 294
E ++G I F + DG V GS+ GL PG +GFH+H GD + GC STG H+NP KEHG
Sbjct: 130 EIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHG 189
Query: 295 HPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
P DE RH GDLGN ++ + I ++D + +TG + I+
Sbjct: 190 APEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSII 230
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 104 bits (249), Expect = 3e-23
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +1
Query: 121 IRGNITFTRLPD-GKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGH 297
+ G + F + P G V G + GL PG +GFH+H GD + GC STG HFNP NK HG
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 298 PSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
PSD+ RHVGDLGN +K+ + I + D ++++G H IL
Sbjct: 83 PSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSIL 122
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Frame = +1
Query: 91 RAIAHLVGEN-IRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
+A+A L G + + G +T T+ G V + GL PG +GFH+HE GD + GC STG H
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH 112
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
FNP N HG P DE RH GDLGN + ++ ++D + ++G + ++
Sbjct: 113 FNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVV 162
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 49.2 bits (112), Expect = 1e-06
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 94 AIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFN 273
A+A G I G + ++ VE + GL PG +G+ ++E GD++ G STG +N
Sbjct: 167 AVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYN 226
Query: 274 PENKEHGHPSDE--NRHVGDLGNAEFDKNYSSKIDMID 381
P + P + G+ G A+F + K+ ++D
Sbjct: 227 PSDYRSNKPLGDLGTLEAGEKGEAQFSAS-KEKLKVVD 263
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 32.3 bits (70), Expect = 0.16
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 148 LPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTG 261
L + V+ ++ GL P +GFHVH G + GC G
Sbjct: 32 LASSLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240
Length = 336
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -3
Query: 203 WPG-----GSPTIDPSTWTLPSGSRVNVILPLMFSPTRWAIARVGC 81
WPG GS +DP+ + LP G+ V P +S W AR GC
Sbjct: 37 WPGILSNAGSARMDPTGFELPPGAARAVPAPTGWSGRLW--ARTGC 80
>10_02_0121 - 5513491-5513630,5514765-5514850,5515206-5515333
Length = 117
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 229 GDISGGCGSTGSHFNPENKEHGHPSDEN 312
G I+G G TG H P+ + HP E+
Sbjct: 64 GPITGNSGGTGQHAAPKYRSTTHPDKED 91
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -3
Query: 332 PRSPTWRFSSLGWPCSLFSGLK*EPVEPQPPDMSPFSWTWNP*WPGGSPTIDPS 171
P S W ++G+P P P PP +P P G PT+DPS
Sbjct: 259 PESNAWTVPTIGFP----------PPPPPPPSPAPIQHFARPLHVWGHPTMDPS 302
>04_04_0588 - 26412487-26413887
Length = 466
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 344 NSALPRSPTWRFSSLGWPCSLFSGLK*EPVEPQPPDMSPFSWTWNP*WPGGSPTIDPSTW 165
+S+ P SP S+ P + S P P + PF++ + GGSP + P +W
Sbjct: 69 SSSAPPSPR-SSSASDAPVRVISSSPSSPSPPSARHIFPFAYEASTTTVGGSPRLHPLSW 127
Query: 164 TLPSGSR 144
S S+
Sbjct: 128 QQSSMSQ 134
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 27.9 bits (59), Expect = 3.5
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = +1
Query: 205 YGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSD-ENRHVGDLGNAEFDKNYSSKIDMID 381
YG H G GG G G H HGH H G G F ++ +
Sbjct: 96 YGAHKLSHGHGHGGYGYGGHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFG 155
Query: 382 PHLAITGAHG 411
H G HG
Sbjct: 156 GHHGFGGHHG 165
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 32 FYSPQLLSL*AAIMNARSRHGLSPIWS 112
F++P +++ AA+ AR GLSP+WS
Sbjct: 332 FFAPSVIAA-AAVYAARCTLGLSPLWS 357
>07_01_0297 - 2156960-2157736
Length = 258
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 118 NIRGNITFTRLPDGKVH 168
N+ G IT+ LPDG+VH
Sbjct: 80 NLDGRITYQSLPDGEVH 96
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 208 GFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVGDLGNAEFD 348
GF +GD SGG G G F + P D R + D G +D
Sbjct: 1159 GFGGRGRGDFSGGRGGRGRGFGGRGRSDRGPHD--RFISD-GRGRYD 1202
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 47 LLSL*AAIMNARSRHGLSPIWSGRTSEAILRSLG 148
L SL A I+ + HG P W G S + SLG
Sbjct: 292 LSSLTALILQENNLHGGIPSWLGNLSSLVYLSLG 325
>05_01_0214 - 1615519-1616775
Length = 418
Score = 26.6 bits (56), Expect = 8.0
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 94 AIAHLVGEN--IRGNITFTRLPDGKVH--VEGSIVGLPPGHYGFHVHEKG---DISGGCG 252
AI L+ E+ ++G++ F G + ++G GH H H G D G G
Sbjct: 146 AIVRLINESGEVQGSLMFAVSAFGLFVNIIMAVLLGHDHGHGHGHGHGHGHSHDHDHG-G 204
Query: 253 STGSHFNPENKEHGH 297
S H + E++EHGH
Sbjct: 205 SDHDHHHHEDQEHGH 219
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 70 HERSQPTRAIAHLVGENIRGNITFTRLPDG 159
H+RS PT A +V +N+ N+ F +P G
Sbjct: 386 HQRSMPTSAALDVVAKNL--NLKFFEVPTG 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,134
Number of Sequences: 37544
Number of extensions: 274230
Number of successful extensions: 775
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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