Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H19
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 100 5e-22
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 100 5e-22
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 100 5e-22
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 100 5e-22
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 91 3e-19
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 91 3e-19
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 91 3e-19
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 91 4e-19
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 7e-04
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 7e-04
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 28 2.4
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 28 2.4
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 27 7.2
U40060-6|AAA81144.1| 268|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF326787-1|AAK38268.1| 417|Caenorhabditis elegans CLN-3.3 protein. 27 7.2
AF078788-5|AAC26960.2| 417|Caenorhabditis elegans Human cln (ne... 27 7.2
AL110487-16|CAH10818.1| 304|Caenorhabditis elegans Hypothetical... 26 9.5
AL110487-15|CAH10817.1| 307|Caenorhabditis elegans Hypothetical... 26 9.5
AL110487-14|CAB54432.1| 395|Caenorhabditis elegans Hypothetical... 26 9.5
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 100 bits (239), Expect = 5e-22
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +1
Query: 91 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
FNP K HG P E RHVGDLGN E + +KI + D + + G + ++
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVV 113
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 100 bits (239), Expect = 5e-22
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +1
Query: 91 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
FNP K HG P E RHVGDLGN E + +KI + D + + G + ++
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVV 113
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 100 bits (239), Expect = 5e-22
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +1
Query: 91 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 4 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 63
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
FNP K HG P E RHVGDLGN E + +KI + D + + G + ++
Sbjct: 64 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVV 113
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 100 bits (239), Expect = 5e-22
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +1
Query: 91 RAIAHLVGENIRGNITFTRLPDG-KVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
RA+A L GE + G I T+ + + +EG I GL PG +GFHVH+ GD + GC S G H
Sbjct: 26 RAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPH 85
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
FNP K HG P E RHVGDLGN E + +KI + D + + G + ++
Sbjct: 86 FNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVV 135
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 91.1 bits (216), Expect = 3e-19
Identities = 42/109 (38%), Positives = 61/109 (55%)
Frame = +1
Query: 91 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 270
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 271 NPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
NP HG P D NRH+GDLGN E + + I + D +++G + I+
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSII 137
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 91.1 bits (216), Expect = 3e-19
Identities = 42/109 (38%), Positives = 61/109 (55%)
Frame = +1
Query: 91 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 270
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 271 NPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
NP HG P D NRH+GDLGN E + + I + D +++G + I+
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSII 137
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 91.1 bits (216), Expect = 3e-19
Identities = 42/109 (38%), Positives = 61/109 (55%)
Frame = +1
Query: 91 RAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHF 270
+A A + + G I F + + + GS+ GL G +GFH+HEKGD GC S G H+
Sbjct: 30 KAEAGKIPTELIGTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHY 88
Query: 271 NPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
NP HG P D NRH+GDLGN E + + I + D +++G + I+
Sbjct: 89 NPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSII 137
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 90.6 bits (215), Expect = 4e-19
Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Frame = +1
Query: 91 RAIAHLVGENIRGNITFTRLPDGK-VHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
RA+A L G + G + T+ +G+ EG I GL PG +GFH+H+ GD + GC S G H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
FNP HG RHVGDLGN E + +KI D +++ GA+ ++
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVI 133
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 7e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 88 TRAIAHLV---GENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGST 258
T A+A L+ G +I G TF++L + + G + LP G + +H+ GD S GC
Sbjct: 882 TIAVAILITREGAHI-GRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRV 940
Query: 259 GSHFN 273
G+ F+
Sbjct: 941 GAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 7e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 88 TRAIAHLV---GENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGST 258
T A+A L+ G +I G TF++L + + G + LP G + +H+ GD S GC
Sbjct: 673 TIAVAILITREGAHI-GRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRV 731
Query: 259 GSHFN 273
G+ F+
Sbjct: 732 GAPFS 736
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 382 GRSYQSCWSSSCQIPRYQDP 323
GR Y+SCW + +P Y+ P
Sbjct: 349 GRRYKSCWHNELGLPIYEGP 368
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 382 GRSYQSCWSSSCQIPRYQDP 323
GR Y+SCW + +P Y+ P
Sbjct: 349 GRRYKSCWHNELGLPIYEGP 368
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 319 VGDLGNAEFDKNYSSKIDMIDPHLAITGAH 408
+G LG K Y S + IDPHLA H
Sbjct: 2431 LGLLGVFSVPKVYESNQEAIDPHLATISGH 2460
>Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical
protein W06A7.3e protein.
Length = 204
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 319 VGDLGNAEFDKNYSSKIDMIDPHLAITGAH 408
+G LG K Y S + IDPHLA H
Sbjct: 147 LGLLGVFSVPKVYESNQEAIDPHLATISGH 176
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 319 VGDLGNAEFDKNYSSKIDMIDPHLAITGAH 408
+G LG K Y S + IDPHLA H
Sbjct: 513 LGLLGVFSVPKVYESNQEAIDPHLATISGH 542
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 319 VGDLGNAEFDKNYSSKIDMIDPHLAITGAH 408
+G LG K Y S + IDPHLA H
Sbjct: 2427 LGLLGVFSVPKVYESNQEAIDPHLATISGH 2456
>Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical
protein W06A7.3b protein.
Length = 222
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 319 VGDLGNAEFDKNYSSKIDMIDPHLAITGAH 408
+G LG K Y S + IDPHLA H
Sbjct: 165 LGLLGVFSVPKVYESNQEAIDPHLATISGH 194
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 319 VGDLGNAEFDKNYSSKIDMIDPHLAITGAH 408
+G LG K Y S + IDPHLA H
Sbjct: 2550 LGLLGVFSVPKVYESNQEAIDPHLATISGH 2579
>U40060-6|AAA81144.1| 268|Caenorhabditis elegans Hypothetical
protein F38B6.3 protein.
Length = 268
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 130 NITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDI-SGGCGSTGSHFNPENKEHGHPSD 306
N TF+R + +H+E + Y H +G + S +TG+ + + G+ SD
Sbjct: 14 NFTFSRSRENMIHIENGKESIQKMSYNHHNQSQGYVPSYNSQNTGAAY-MARRGWGNESD 72
Query: 307 ENRHVGDLGNAEFDKNYSSKIDMI 378
N + + + Y + M+
Sbjct: 73 RNTTISFSSKSSSKRIYITLFIMV 96
>AF326787-1|AAK38268.1| 417|Caenorhabditis elegans CLN-3.3 protein.
Length = 417
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 191 SPTIDPSTWTLPSG 150
SPT+DP +W +P G
Sbjct: 211 SPTLDPKSWIVPKG 224
>AF078788-5|AAC26960.2| 417|Caenorhabditis elegans Human cln
(neuronal ceroid lipofuscinosis)related protein 3.3
protein.
Length = 417
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 191 SPTIDPSTWTLPSG 150
SPT+DP +W +P G
Sbjct: 211 SPTLDPKSWIVPKG 224
>AL110487-16|CAH10818.1| 304|Caenorhabditis elegans Hypothetical
protein Y39E4B.3c protein.
Length = 304
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 124 RGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISG-GCGSTGS 264
R N F P G H + G P GFH + G G G GS S
Sbjct: 83 RPNNNFNNNPQGGFHPNPNQGGFHPNQGGFHPNNGGFRPGTGLGSQSS 130
>AL110487-15|CAH10817.1| 307|Caenorhabditis elegans Hypothetical
protein Y39E4B.3b protein.
Length = 307
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 124 RGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISG-GCGSTGS 264
R N F P G H + G P GFH + G G G GS S
Sbjct: 83 RPNNNFNNNPQGGFHPNPNQGGFHPNQGGFHPNNGGFRPGTGLGSQSS 130
>AL110487-14|CAB54432.1| 395|Caenorhabditis elegans Hypothetical
protein Y39E4B.3a protein.
Length = 395
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 124 RGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISG-GCGSTGS 264
R N F P G H + G P GFH + G G G GS S
Sbjct: 83 RPNNNFNNNPQGGFHPNPNQGGFHPNQGGFHPNNGGFRPGTGLGSQSS 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,734
Number of Sequences: 27780
Number of extensions: 200404
Number of successful extensions: 511
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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