Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H19
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 111 2e-25
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 104 3e-23
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 100 4e-22
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 58 3e-09
At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) simi... 31 0.24
At4g38660.1 68417.m05473 thaumatin, putative similar to thaumati... 30 0.72
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 0.95
At3g11870.1 68416.m01455 protein kinase-related contains eukaryo... 29 0.95
At5g61350.1 68418.m07698 protein kinase family protein contains ... 28 2.9
At1g15780.1 68414.m01893 expressed protein 28 2.9
At4g24800.1 68417.m03552 MA3 domain-containing protein similar t... 27 3.8
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 27 3.8
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 27 3.8
At5g19740.1 68418.m02347 peptidase M28 family protein ileal pept... 27 5.1
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 5.1
At1g60960.1 68414.m06862 metal transporter, putative (IRT3) iden... 27 5.1
At5g41505.1 68418.m05040 hypothetical protein 27 6.7
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 27 6.7
At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containi... 27 6.7
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 26 8.9
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 111 bits (266), Expect = 2e-25
Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = +1
Query: 91 RAIAHLVGEN-IRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSH 267
RA+A + G+N +RG + F + G HV G I GL PG +GFH+H GD + GC STG H
Sbjct: 9 RAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPH 68
Query: 268 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
FNP N+ HG P++E RH GDLGN N ++I + D H+ ++G + IL
Sbjct: 69 FNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSIL 118
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 104 bits (249), Expect = 3e-23
Identities = 46/101 (45%), Positives = 61/101 (60%)
Frame = +1
Query: 115 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHG 294
E + G I FT+ DG V G++ GL PG +GFHVH GD + GC STG HFNP+ K HG
Sbjct: 12 EGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHG 71
Query: 295 HPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
P D NRH GDLGN + ++ + D + +TG + I+
Sbjct: 72 APEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIV 112
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 100 bits (239), Expect = 4e-22
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Frame = +1
Query: 79 SQPTRAIAHLVG-ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGS 255
S +A+A L G ++ G +T T+ G V I GL PG +GFH+HE GD + GC S
Sbjct: 62 SAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCIS 121
Query: 256 TGSHFNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGIL 417
TG HFNP N HG P DE RH GDLGN + + ++ ++D + +TG + ++
Sbjct: 122 TGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVV 175
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 57.6 bits (133), Expect = 3e-09
Identities = 30/87 (34%), Positives = 46/87 (52%)
Frame = +1
Query: 94 AIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFN 273
A+A G +I G + F ++ +E + GL PG + + ++E GD++ G STGS +N
Sbjct: 98 AVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYN 157
Query: 274 PENKEHGHPSDENRHVGDLGNAEFDKN 354
P + G +GDLG E DKN
Sbjct: 158 PFQDQTG-----TEPLGDLGTLEADKN 179
>At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) similar
to Zn and Cd transporter ZNT1 [Thlaspi caerulescens]
gi|7381054|gb|AAF61374; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 408
Score = 31.5 bits (68), Expect = 0.24
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 94 AIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFN 273
A+ +VGE + N F G +H IVG+ H H H + G C +H +
Sbjct: 182 AVVPVVGERVTDNKVFGEEDGGGIH----IVGI-RAHAAHHRHSHSNSHGTCDG-HAHGH 235
Query: 274 PENKEHGHPSDEN--RHV 321
HG+ EN RHV
Sbjct: 236 SHGHMHGNSDVENGARHV 253
>At4g38660.1 68417.m05473 thaumatin, putative similar to
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406, thaumatin-like protein precursor [Pyrus
pyrifolia] GI:3241854; contains Pfam profile PF00314:
Thaumatin family
Length = 345
Score = 29.9 bits (64), Expect = 0.72
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -3
Query: 203 WPG-----GSPTIDPSTWTLPSGSRVNVILPLMFSPTRWAIARVGCE 78
WPG GSPT+ + + LP G+ ++ P +S W AR GC+
Sbjct: 43 WPGILSNAGSPTLSTTGFELPKGTSRSLQAPTGWSGRFW--ARTGCK 87
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.5 bits (63), Expect = 0.95
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +1
Query: 178 SIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNP-ENKEHGHPSDENRHVG-DLGNAEFDK 351
S G GHY H HE+ GC + N +K + H D+ R D +D
Sbjct: 124 SEAGSRNGHYRDHEHERSSRYDGCDDYSCNDNNYRSKNYHHSRDDGREKDYDYTRRSYDS 183
Query: 352 NY 357
Y
Sbjct: 184 EY 185
>At3g11870.1 68416.m01455 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 554
Score = 29.5 bits (63), Expect = 0.95
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 217 VHEKGDISGGCGSTGSHFNPENKEHGHPSDEN 312
V +K D SGG G N E+K PSD+N
Sbjct: 58 VEKKSDPSGGLGEENEKTNSESKVLSVPSDQN 89
>At5g61350.1 68418.m07698 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 842
Score = 27.9 bits (59), Expect = 2.9
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = -3
Query: 242 PDMSPFSWTW---NP*--WPGGSP--TIDPSTWTLPSGSRVNVILP 126
P + P S TW P +P GS T+DPST T P G +I P
Sbjct: 228 PKIDPLSRTWLSDKPYNTFPEGSRNVTVDPSTITYPDGGATALIAP 273
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -3
Query: 215 WNP*WPGGSPTIDPSTW--TLPSGSRVNVILPLM 120
W P P G P +D W LP SR ++ +M
Sbjct: 6 WRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIM 39
>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +1
Query: 157 GKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVGD 327
GK + V H G + K D GG G+ G + + H P+D N G+
Sbjct: 44 GKASGASNAVKHRRSHAGRSIRSKKDGGGGKGNWGKLIDTDGDYHIDPNDPNYDSGE 100
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 199 GHYGFHVHEKGDISGGCGSTGSHFNPENKE---HGHPSDENRHVGDLGNAEFDKN 354
GH H H+ + S G T H + +++ HGH D++ GD+ DK+
Sbjct: 189 GHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKS 243
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 199 GHYGFHVHEKGDISGGCGSTGSHFNPENKE---HGHPSDENRHVGDLGNAEFDKN 354
GH H H+ + S G T H + +++ HGH D++ GD+ DK+
Sbjct: 189 GHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKS 243
>At5g19740.1 68418.m02347 peptidase M28 family protein ileal
peptidase I100 - Rattus norvegicus, EMBL:AF009921;
contains Pfam profiles PF04389: Peptidase family M28,
PF02225: PA domain
Length = 681
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 197 GGSPTIDPSTWTLPSGSRVNVILPLMFSPTRWAIARV-GCER 75
GG S W PSG +V + + PT A V GCER
Sbjct: 206 GGDEWFPASKWMPPSGVQVGTVYNGLGDPTTPGWASVDGCER 247
>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
protein similar to PF02225: PA domain; similar to
N-acetylated-alpha-linked acidic dipeptidase II
(NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
Glutamate carboxypeptidase II (Membrane glutamate
carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
acidic dipeptidase I) (NAALADase I)
(Pteroylpoly-gamma-glutamate
carboxypeptidase)(Folylpoly-gamma-glutamate
carboxypeptidase) (FGCP) (Folate hydrolase 1)
(Prostate-specific membrane antigen homolog) (SP|O77564)
{Sus scrofa}
Length = 280
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 197 GGSPTIDPSTWTLPSGSRVNVILPLMFSPTRWAIARV-GCER 75
GG S W PSG +V + + PT A V GCER
Sbjct: 71 GGDEWFPASKWMPPSGFQVGTVYNGLGDPTTPGWASVDGCER 112
>At1g60960.1 68414.m06862 metal transporter, putative (IRT3)
identical to putative metal transporter IRT3
[Arabidopsis thaliana] gi|17385796|gb|AAL38438; similar
to iron-regulated transporter 1 [Lycopersicon
esculentum] gi|9716481|gb|AAF97509; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 425
Score = 27.1 bits (57), Expect = 5.1
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Frame = +1
Query: 76 RSQPTRAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGL-------PPGHYGFHVHEKGD 234
R Q + ++GE F G +H+ G PPGH H K D
Sbjct: 180 REQSPGIVVPMIGEGTNDGKVFGEEDSGGIHIVGIHAHAAHHRHSHPPGHDSCEGHSKID 239
Query: 235 ISGGCGSTGSHFNPENKEHGH 297
I G +H + HGH
Sbjct: 240 I----GHAHAHGHGHGHGHGH 256
>At5g41505.1 68418.m05040 hypothetical protein
Length = 245
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 67 HHERSQPTRAIAHLVGENIRGNITFTRLPDGKV--HVEG 177
H ER T + L+ +N+R + + L GKV HVEG
Sbjct: 201 HGERPSTTEKMVKLIDKNVRNRL--STLKQGKVEKHVEG 237
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 96 YRPSGRGEHQRQYYVHSA 149
YRP G+ HQ QYY A
Sbjct: 76 YRPYGQNYHQNQYYPQQA 93
>At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 577
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 132 IASDVLPDQMGDSPCRLRAFMMAAHNDSNC 43
+A D+L +QM D +L +F+++A ++NC
Sbjct: 365 VAVDILLNQMRDRNIKLDSFVVSAIIETNC 394
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 223 EKGDISGGCGSTGSHFNPENKEHGHPSDENRHV 321
E+ + G G+ G++ K H H +D+ RH+
Sbjct: 84 EEEEEDGAAGNKGTNKRKRKKYHRHTTDQIRHM 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,006
Number of Sequences: 28952
Number of extensions: 196936
Number of successful extensions: 547
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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