Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H18
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_10386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_26367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 305 LYKSFKYKKIVSQAIRPRFARCRLLIII--I*YVDNSFSLSIIAELDFDIH 451
           +YK FKYK IV+     R A C  +I +  + +   SF++S    +  D+H
Sbjct: 128 IYKPFKYKVIVTSR---RVATCNAIIWVYSVLFTLTSFTMSREVFMQIDLH 175


>SB_10386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 168 LLISVQ*FIGNSEVKSPGTSVPRASLLSPRRGRLIPFHI 284
           + +SV+    N E+ S G + PR  ++ P    +  FH+
Sbjct: 519 MYVSVKLIGSNGELISKGRTTPRRHMIDPEYNEMFLFHV 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,037,101
Number of Sequences: 59808
Number of extensions: 221284
Number of successful extensions: 332
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)