Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H17
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   1e-39
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   3e-08
SB_52488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             28   5.9  
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  159 bits (387), Expect = 1e-39
 Identities = 82/177 (46%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
 Frame = +2

Query: 35  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 214
           M  GD+K+  GL+ LN +L ERSY+ GY PSQAD  VFE +   P ASLPH LRWY+HI 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 215 SYTPAERKTWSEGVSXXXXXXXXXXXXXX---SNXXXXXXXXLFGSGXXXXXXXXXXXXX 385
           SY   ++    E  S                 ++        LFGS              
Sbjct: 61  SYGEGKQNFPGEKKSVESFGPAGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAARIRQ 120

Query: 386 XXLKAYADKKSKKPALIAKSSIILDVKPWDDETDLKDMENQVRTIEMDGLLWGASKL 556
             LKAY +KK+KK  +IAKS+I+LDVKPWDDETD+ +ME  VR+I+ DGLLWGASKL
Sbjct: 121 ERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKL 177


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 116 YTPSQADIKVFEQVGKVPAASLPHVLRWYSHIASY 220
           Y PSQAD  VFE +   P ASLPH LRWY+HI SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_52488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 285 VGLAPAVNGLTPSDQVLRSAGVYDAMWLYH 196
           +G+ PA+ GL P+  +  + G+Y A+ LYH
Sbjct: 47  LGIYPALFGLYPTLGLYPTLGLYPALGLYH 76


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 236 CVQQGCTMRCGCTTSKHEVGWQQVLCR 156
           C  + C   CGCT+ +    W +  CR
Sbjct: 552 CFPECCMNACGCTSGQQHFCWLKFRCR 578


>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2022

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 392  LKAYADKKSKKPALIAKSSIILDVKPWDDETDLKDMENQVRTIE 523
            L A  D KS KPAL  K    + ++    E+ L+ +EN+ R+IE
Sbjct: 1306 LDAGGDPKSSKPALQHKIQEEVGIRIVRLESALEKVENEKRSIE 1349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,798
Number of Sequences: 59808
Number of extensions: 256628
Number of successful extensions: 3714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3713
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)