Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H16
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)                   27   6.6  
SB_22879| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   8.8  
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)            27   8.8  

>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1436

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +3

Query: 267  AINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSER 446
            A+ + I ++   Y+YYA     + YNN    LTY+      N+  + + + L     ++ 
Sbjct: 822  ALKWAITEKFRDYLYYAPSFTVYTYNNP---LTYILTTAKLNATGHRWVAEL-----ADY 873

Query: 447  YGNLKHRRGEIY 482
               +K+R G IY
Sbjct: 874  NFTIKYRPGRIY 885


>SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)
          Length = 316

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 329 VGIVGVIHILLFLFYNSIINSLCIVKNTV 243
           VG + + +ILLF     +I ++C+V NTV
Sbjct: 168 VGFLALNNILLFKVVGCVIITICLVLNTV 196


>SB_22879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = -3

Query: 329 VGIVGVIHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWINFI 174
           + I+ +I+I++ +    IIN + I+ N +++   IN+   ++I   + IN I
Sbjct: 24  INIIIIINIIINIIIIIIINIIIIIINIIINIIIINIIIIINIIINIIINII 75


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +3

Query: 285 VKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLK 461
           ++  +Q++  A +  TF+Y+  E+       D    +  Y  H  L FW   +   N++
Sbjct: 644 IENLKQFIVQARFVETFVYDMTEKPGKCAIRDRERKTISYNDHRFLVFWTDFQNTNNMR 702


>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
          Length = 173

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +3

Query: 360 LTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYN 488
           + Y  E + F S +  FH      W         H+  E+Y+N
Sbjct: 29  VVYSKESLKFRSVHVEFHGEARTNWDEMENYTTTHKNEEVYFN 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,228,267
Number of Sequences: 59808
Number of extensions: 309838
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)