Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H15
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.37 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.6  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   6.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 295 TINWTVILRPFQSLVALAMSSPTFFGERPRGPILG 191
           +I   VIL  F  + AL++S P  FG    GP  G
Sbjct: 11  SIRHAVILASFVWIYALSLSLPPLFGWGSYGPEAG 45


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 427 SSIVIFPLCLMFFCFLRSR 371
           SS VIF +  + F FLR+R
Sbjct: 14  SSCVIFGVLFVLFSFLRTR 32


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 427 SSIVIFPLCLMFFCFLRSR 371
           SS VIF +  + F FLR+R
Sbjct: 14  SSCVIFGVLFVLFSFLRTR 32


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 127 LGSNLGGIVLTNYCNNKSLYNNSK 56
           LG+N+  +++   C N    NN++
Sbjct: 570 LGANVNDLIMNTRCANSDNQNNNQ 593


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 375 DRKKQKNIKHNGNITMEDVIGIAKIMRP 458
           +++ ++  +  G + ME+ +  AK MRP
Sbjct: 182 EQEAKRRFEKYGQLFMEETLKAAKRMRP 209


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 139 ILISLGSNLGGIVLTNYCNNKSLYNN 62
           I+ SL +N       NY NN + YNN
Sbjct: 314 IISSLSNNYKYSNYNNYNNNYNNYNN 339


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 139 ILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 41
           I+ SL +N       NY NN + YN     N++
Sbjct: 81  IISSLSNNYNYSNYNNYNNNYNNYNKKLYYNIN 113


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +2

Query: 407 WKYHNGRCHWHCQDNASSFNGTLPLRLSKRNPWHSTICWM 526
           W +   R H   Q     F   LP  L  R P  + + WM
Sbjct: 320 WNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWM 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,213
Number of Sequences: 438
Number of extensions: 3306
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)