Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H15
(541 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 225 2e-59
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 220 4e-58
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 220 4e-58
At3g55080.1 68416.m06117 SET domain-containing protein low simil... 28 3.5
At2g31890.1 68415.m03896 expressed protein 27 6.1
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 8.0
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 8.0
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr... 27 8.0
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 225 bits (549), Expect = 2e-59
Identities = 107/146 (73%), Positives = 129/146 (88%), Gaps = 1/146 (0%)
Frame = +3
Query: 105 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 281
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 282 VQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPR 461
V+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKHNGNI+ +DVI IAKIMRPR
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120
Query: 462 SMARYLSGSVKEILGTAQSVGCTVEG 539
S+A+ LSG+VKEILGT SVGCTV+G
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDG 146
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 220 bits (538), Expect = 4e-58
Identities = 104/146 (71%), Positives = 128/146 (87%), Gaps = 1/146 (0%)
Frame = +3
Query: 105 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 281
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 282 VQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPR 461
V+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKHNGNI+ +DV IA+IMRPR
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 462 SMARYLSGSVKEILGTAQSVGCTVEG 539
S+A+ LSG+V+EILGT SVGCTV+G
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDG 146
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 220 bits (538), Expect = 4e-58
Identities = 104/146 (71%), Positives = 128/146 (87%), Gaps = 1/146 (0%)
Frame = +3
Query: 105 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 281
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 282 VQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPR 461
V+L VQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKHNGNI+ +DV IA+IMRPR
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 462 SMARYLSGSVKEILGTAQSVGCTVEG 539
S+A+ LSG+V+EILGT SVGCTV+G
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDG 146
>At3g55080.1 68416.m06117 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 463
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = -3
Query: 245 SDVITNLFWGETKGTDFRSQGGRSTDFSTNTS*VDDFNFIRIKFRRHC 102
+++ +++FWGE + + R DF+F+ F++HC
Sbjct: 144 AEMHSSIFWGEDELSMIRCSAVHQETVKQKAQIEKDFSFVAQAFKQHC 191
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 363 EPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPRSMA 470
+PP+ RKKQKN K +ED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 162 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 260
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 162 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 260
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 625
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 205 GPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 44
G + + P+ PP I+LGS G L ++C+ K ++ + K N+
Sbjct: 382 GSVASCLRERPPSQPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANI 435
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,638,590
Number of Sequences: 28952
Number of extensions: 227782
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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