Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H11
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        28   0.80 
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    27   1.4  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   5.6  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   5.6  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    24   9.8  

>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 234 DMAREDWEGGNSGFRGPGFKEGFQRRVNPKGSRVGIPVSSGRNMV 368
           DM   D+  G S  RG   +  F   VNP GS  G  +S   NM+
Sbjct: 192 DMRSNDYSEGYSA-RGGQSRCPFNLTVNPGGSSSGSAISVASNMI 235


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 447 CGNFYIISIFSIPRALVSR 391
           CGN Y  SIFS   AL+SR
Sbjct: 325 CGNMYTASIFSCLTALLSR 343


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 446 VVIFTLYQYLVSRVLWYPAVGDQPW 372
           VVI TL +Y++SR+ + P V   P+
Sbjct: 169 VVIETLLKYILSRISFIPRVSVVPY 193


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 200 DLVQIPDYHLQILP 159
           DL+ + DYHL +LP
Sbjct: 152 DLIWVQDYHLMVLP 165


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 367 WVHGWSPTAGYQSTRD 414
           W HGW+ TAG  S  D
Sbjct: 248 WNHGWAVTAGIISCLD 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,617
Number of Sequences: 5004
Number of extensions: 36529
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)