Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H11
(463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48790| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 30 0.81
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.81
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06) 29 1.9
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 3.3
SB_14773| Best HMM Match : Pkinase (HMM E-Value=1.1e-05) 27 5.7
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 27 5.7
SB_46907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_35764| Best HMM Match : RVT_1 (HMM E-Value=8.1e-13) 27 7.6
SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_27482| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 27 10.0
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 27 10.0
SB_8302| Best HMM Match : G-alpha (HMM E-Value=0) 27 10.0
>SB_48790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 251 ILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLDHRCP 126
ILP H RI R +ILPD QI H +I+PD + L P
Sbjct: 64 ILPDHSRIIPDRSRILPDHSQIIPDHSRIVPDRSRILPIHSP 105
Score = 31.9 bits (69), Expect = 0.27
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 251 ILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLDHRCPGHRVLV*NLGCYLQIH-P 75
I+P H RI R +ILPD +I +ILPD Q + P H +V + L IH P
Sbjct: 50 IIPDHSRIIPDRSRILPDHSRIIPDRSRILPDHSQII----PDHSRIVPDRSRILPIHSP 105
Query: 74 GLVH 63
VH
Sbjct: 106 YQVH 109
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 263 SPFPILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNL-DH 135
S F ILPG +I +ILPDL +I +ILPD + + DH
Sbjct: 11 SIFRILPGLSQILPDHSRILPDLSRIIPDRSRILPDNSRIIPDH 54
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 251 ILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNL-DH 135
ILP RI R +ILPD +I H +I+PD + L DH
Sbjct: 29 ILPDLSRIIPDRSRILPDNSRIIPDHSRIIPDRSRILPDH 68
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 30.3 bits (65), Expect = 0.81
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 255 EGGNSGFRGPGFKEGFQRRVNPKGSRVGIPVSSGR 359
E GN G RGP + G + PKG GIP GR
Sbjct: 402 EKGNQGSRGPTGRVGPDGKTGPKGQN-GIPGRDGR 435
>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 30.3 bits (65), Expect = 0.81
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 352 LETGIPTLEPFGLTLLWNPSL-NPGPRN 272
LE+GI TL P L WNP NPG RN
Sbjct: 3 LESGIHTLGPGIQDLSWNPEYKNPGKRN 30
>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
Length = 421
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 245 PGHVRIPDYRHQILPDLVQ--IPDYHLQILPDPDQNLDHRCPGHRVL 111
P HV I + HQ+ P I +H Q+ P P + C H+V+
Sbjct: 207 PSHVIIKSHHHQVTPSSSHTIIKSHHHQVAPSPSHVIIKSC-HHQVM 252
>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 253 GKGEIQDSAGQGSRKDSKEGLTQRVQGLGFRFQVGGTWWVH 375
GKG + DSA + +K + GL +R+Q + R + T+W H
Sbjct: 273 GKG-LLDSAKKSKKKFIRSGLAERLQRIINREKSDRTFWQH 312
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 301 NPSLNPGPRNPEFPPSQSSL 242
NPS+ P P NP PP+ +L
Sbjct: 338 NPSIPPAPPNPSIPPAPPNL 357
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = -1
Query: 397 IPPLVTNHGPTMFRPL----ETGIP--TLEPFGLTLLWNPSLNPGPRNPEFP-PSQSSLA 239
IPP N + P ET +P T PF NPS+ P P NP P P S+
Sbjct: 229 IPPAPPNPSKAIATPNPPMPETPLPPATPNPFIPPASPNPSIPPAPPNPSIPAPPNPSIP 288
Query: 238 MS 233
++
Sbjct: 289 LA 290
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 301 NPSLNPGPRNPEFPPS 254
NPS+ P P NP PP+
Sbjct: 329 NPSIPPAPPNPSIPPA 344
>SB_14773| Best HMM Match : Pkinase (HMM E-Value=1.1e-05)
Length = 194
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 254 PILPGHVRIPDYRHQILPDLVQIP 183
P+ PG +PDY PD+ IP
Sbjct: 76 PLFPGMTDLPDYNKITFPDMPAIP 99
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 219 VIRDTDMAREDWEGGNSGFRGPGFKEGFQRRVNPKGSRVG 338
++ D M +D+ G + GF GPGF G R P G R G
Sbjct: 180 ILFDPSMQADDF-GYDGGFGGPGFGGG-PMRGGPMGGRGG 217
>SB_46907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 196 RSGRIWWR*SGIRTWPGRIGKGEIQDSAGQG--SRKDSKEGLTQRVQ 330
R + W+ +G P +GK I S G+G RK +KE L V+
Sbjct: 69 RGSLMRWKKAGSSINPNLLGKVNIPSSIGEGGSKRKKNKEDLVDIVE 115
>SB_35764| Best HMM Match : RVT_1 (HMM E-Value=8.1e-13)
Length = 362
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 249 DWEGGNSGFRGPGFKEGFQRRVNPKGSRVGIPVSS-GRNMVGP 374
+WEG S ++ QRRV V P+S+ GR+ +GP
Sbjct: 64 NWEGAESSSMPDPVRKTCQRRVKTFHPSVDTPMSTFGRSSLGP 106
>SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 299 SFLEPWPAES*ISPFPILPGHVRIPDYRHQILPDLVQIPDYHLQ 168
+F E W ES ++ L V + D H ++ +V+IP +L+
Sbjct: 173 AFAETWMPESIVNGLRALGHKVNVSDTSHGVVQGVVKIPYKYLK 216
>SB_27482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 388 LVTNHGPTMFRPLETGIPTLEPFGLTLLWNPSLNPGPRN 272
+ NH PT++R + +PT P L + ++P P +
Sbjct: 1 MTPNHIPTLYRCMTKRLPTCTPVTLPFISCTPVHPPPND 39
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 397 IPPLVTNHGPTMFRPLETGIPTLEPFGLTLLWN--PSLNPGPRNP 269
+ PL T G + PL TG+ TL P G + P PG NP
Sbjct: 748 LTPLATGLGTRI--PLATGLGTLNPLGYGPGYTNPPGYGPGYTNP 790
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 358 GTWWVHGWSPTAGYQSTRD-TKY*YNVKI 441
G WW+ GW T Q TRD Y Y++ +
Sbjct: 551 GAWWLAGWRVTP--QGTRDQVAYLYHISM 577
>SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)
Length = 315
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 30 TAYLITEVLATVDKARVDLEVTAKVLDQNTV 122
T Y + ++ +DK R+D E A+++D V
Sbjct: 77 TIYSLLTIIRAMDKLRIDFENDARLMDAKLV 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,363,581
Number of Sequences: 59808
Number of extensions: 292323
Number of successful extensions: 918
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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