Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H11
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038623-5|AAO91700.1| 531|Caenorhabditis elegans Hypothetical ... 29 1.2
AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical... 29 2.1
AF024494-6|AAB70330.1| 135|Caenorhabditis elegans Hypothetical ... 27 4.9
Z81538-1|CAB04383.1| 569|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 27 8.6
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 27 8.6
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 27 8.6
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 27 8.6
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 27 8.6
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 27 8.6
>AF038623-5|AAO91700.1| 531|Caenorhabditis elegans Hypothetical
protein T08B6.9 protein.
Length = 531
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 455 IKYVVIFTLYQYLVSRVLWYPAVGDQPW 372
+KY + +Y YL ++W+P +GDQ +
Sbjct: 270 VKYTRLQFIYFYLRFAIMWHPKLGDQDY 297
>AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical
protein Y53F4B.25 protein.
Length = 603
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -3
Query: 314 NPSLESFLEPWPAES*ISPFPILPGHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLD- 138
NP + W + + P PI P R +P VQ P Y Q P Q+ D
Sbjct: 263 NPFFPQQHQTWTPPTLLQPNPIPPPPQRNESSFDPYIPIGVQQPPYQFQQNFQPAQSADA 322
Query: 137 HRCPGH 120
HR P H
Sbjct: 323 HRQPMH 328
>AF024494-6|AAB70330.1| 135|Caenorhabditis elegans Hypothetical
protein C38C3.6 protein.
Length = 135
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 436 LHYINI*YPACFGIPPLVTNHGPTMFRPLETGIPTLEP 323
+HY++ YP F +PP P + LE G P L+P
Sbjct: 86 MHYLDECYPPNFIVPP---TEPPPPYPGLEKGPPPLDP 120
>Z81538-1|CAB04383.1| 569|Caenorhabditis elegans Hypothetical
protein F45H10.1 protein.
Length = 569
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 462 HSNKICGNFYIISIFSIPRALVSRRW*PTMDPPCSAHLKPESQ-PLNPL 319
H+ + G +I+ ++ P A+++R+ + CSA +KP PL+ L
Sbjct: 150 HTREPIGVVALIAPWNFPTAMIARKAAAALSVGCSAVVKPSGDTPLSAL 198
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 280 PRNPEFPPSQSSLAMS 233
PRNPE PP QSS M+
Sbjct: 361 PRNPEAPPIQSSSKMA 376
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 280 PRNPEFPPSQSSLAMS 233
PRNPE PP QSS M+
Sbjct: 361 PRNPEAPPIQSSSKMA 376
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 343 GIPTLEPFGLTLLWNPSLNPGPRNPEFPPSQSSL 242
G P + G T + P PGPR P+ PP + L
Sbjct: 201 GPPGDDSIGGTGIKGPPGPPGPRGPKGPPGSNGL 234
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 343 GIPTLEPFGLTLLWNPSLNPGPRNPEFPPSQSSL 242
G P + G T + P PGPR P+ PP + L
Sbjct: 201 GPPGDDSIGGTGIKGPPGPPGPRGPKGPPGSNGL 234
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 280 PRNPEFPPSQSSLAMS 233
PRNPE PP QSS M+
Sbjct: 361 PRNPEAPPIQSSSKMA 376
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 280 PRNPEFPPSQSSLAMS 233
PRNPE PP QSS M+
Sbjct: 361 PRNPEAPPIQSSSKMA 376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,616,913
Number of Sequences: 27780
Number of extensions: 208423
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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