Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H11
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35230.1 68418.m04177 hypothetical protein                          29   1.2  
At5g56980.1 68418.m07112 expressed protein non-consensus CG dono...    29   1.5  
At3g02670.1 68416.m00258 proline-rich family protein contains pr...    29   1.5  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    29   1.5  
At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.7  
At3g20720.1 68416.m02622 expressed protein                             27   8.2  
At3g02230.1 68416.m00204 reversibly glycosylated polypeptide-1 (...    27   8.2  
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    27   8.2  
At1g19020.1 68414.m02367 expressed protein                             27   8.2  

>At5g35230.1 68418.m04177 hypothetical protein 
          Length = 366

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 253 GKGEIQDSAGQGSRKDSKEGLTQRVQGLGFRFQVG 357
           G+G      G+G  + S EGL   V+G GF    G
Sbjct: 99  GRGRAAPGRGRGREQPSHEGLVDEVEGEGFGADAG 133


>At5g56980.1 68418.m07112 expressed protein non-consensus CG donor
           splice site at exon 1, GA donor splice site at exon 3
          Length = 379

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -3

Query: 242 GHVRIPDYRHQILPDLVQIPDYHLQILPDPDQNLDHRCPGHRVLV*NLGCYLQIHPGLVH 63
           GH   P  R   + D V+  ++HL   P P+  L      H ++  +L  Y   +P  + 
Sbjct: 50  GHAPAPLARAPSIIDRVKSINFHLYKFPHPETELFSMTAHHDIIGSDLHVYPDPNPAPLQ 109

Query: 62  RSQNLRNEV 36
           R+ +L + V
Sbjct: 110 RAPSLLDRV 118


>At3g02670.1 68416.m00258 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 217

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 261 GNSGFRG-PGFKEGFQRRVNPKGSRV-GIPVSSGRNMVGPWLVTNGGIP 401
           G  G  G PGF+  F    +P G  + GIP S G  +  P+  + GGIP
Sbjct: 121 GLPGIPGSPGFRLPFPFPSSPGGGSIPGIPGSPGFRLPFPFPPSGGGIP 169


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 301 NPSLNPGPRNPEFPPSQS 248
           +PS N GP NPE PP QS
Sbjct: 137 SPSPNVGPTNPESPPLQS 154


>At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 473

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 439 FLHYINI*YPACFGIPPLVTNHGPTMFRPLETGIPTLEPFGLTLLWNPSLNPGPRN-PEF 263
           F H + +   A   I  LVT        PL + +  +EP  L    +PS+  G  N  + 
Sbjct: 32  FTHRLALRGGAALKITVLVTPKNLPFLSPLLSAVVNIEPLILPFPSHPSIPSGVENVQDL 91

Query: 262 PPS 254
           PPS
Sbjct: 92  PPS 94


>At3g20720.1 68416.m02622 expressed protein 
          Length = 1083

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 294  EGFQRRVNPKGSRVGIPVSS 353
            EGF +  +PK SR G P SS
Sbjct: 990  EGFDKMFSPKASRAGSPKSS 1009


>At3g02230.1 68416.m00204 reversibly glycosylated polypeptide-1
           (RGP1) identical to reversibly glycosylated
           polypeptide-1 (AtRGP) [Arabidopsis thaliana] GI:2317729
          Length = 357

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 400 GIPPLVTNHGPTMFRPLETGIPTLEPFGLTLLWNPSLNP 284
           GIP    NH P +   L+  IPT+       +W P L P
Sbjct: 9   GIP---VNHIPLLKDELDIVIPTIRNLDFLEMWRPFLQP 44


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 394 PPLVTNHGPTMFRP 353
           PPL++NH PT ++P
Sbjct: 588 PPLISNHTPTSYQP 601


>At1g19020.1 68414.m02367 expressed protein
          Length = 86

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 214 WR*SGIRTWPGRIGKGEIQDSAGQGSRKDSKEGLTQRVQGL 336
           W  SG     GRIG G +  S+G G+  ++ +   +  QGL
Sbjct: 10  WDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGL 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,481,748
Number of Sequences: 28952
Number of extensions: 211052
Number of successful extensions: 564
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)