Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H10
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 74 1e-14
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 45 4e-06
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 41 7e-05
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 40 2e-04
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 38 6e-04
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 37 0.001
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 31 0.074
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 31 0.098
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 28 0.52
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 0.69
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 27 1.6
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 1.6
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 27 1.6
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 2.8
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 4.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.4
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 24 8.5
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 73.7 bits (173), Expect = 1e-14
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Frame = +1
Query: 13 PEGLINLGNTCYMNATVQCLKTVPELKNALLNYDKASGGGTAGDLTSALSDTMSXXXXXX 192
P GLINLGNTCYMN+TVQ L+ +PEL +A+ ++ S GG + + L+ S
Sbjct: 99 PSGLINLGNTCYMNSTVQMLRAIPELSDAVSQFN--SSGGLVAEYRTLLNSMQS------ 150
Query: 193 XXXXXXXXXXXXXXXXXXXPRFAERA-AGGGLAQQDASECWTEIVRALQQRL 345
P+FAE + GG AQQDA ECW+ ++ LQ+ L
Sbjct: 151 --NAPVTPMRFLQSLRMEYPQFAEMSRETGGYAQQDAEECWSFLLSVLQRSL 200
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 45.2 bits (102), Expect = 4e-06
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Frame = +1
Query: 13 PEGLINLGNTCYMNATVQCL-----KTVPEL--KNALLNYDKASGGGTAGDLTSA 156
P GL NLGNTCYMN +QCL T+P L + L N + + GT G +TSA
Sbjct: 71 PIGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSA 125
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 41.1 bits (92), Expect = 7e-05
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 1 ALDLPEGLINLGNTCYMNATVQCLKTVPELKNALLNYDK 117
+LD P GL N GN CY+N+ +Q + L+NA+L+ D+
Sbjct: 609 SLDTPIGLENTGNLCYLNSLIQYYFIIKPLRNAILDIDE 647
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 39.9 bits (89), Expect = 2e-04
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCLKTVPELKN 96
GL NLGNTCYMN+ +QCL EL++
Sbjct: 312 GLSNLGNTCYMNSALQCLTHTRELRD 337
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 37.9 bits (84), Expect = 6e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCLKTVPELKNALLN 108
GL+NLGNTC+MN+ +Q + P L LL+
Sbjct: 126 GLVNLGNTCFMNSVLQLMTQTPPLVQYLLS 155
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 37.1 bits (82), Expect = 0.001
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCLKTVPELKNALL--NYDK 117
GL NLGN+CYMN+ +QC+ EL L +Y+K
Sbjct: 280 GLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEK 314
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.1 bits (67), Expect = 0.074
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCLKTVPELKNALLN 108
GL NLGN+CY+ +T+Q L ++ E LN
Sbjct: 301 GLKNLGNSCYLASTMQSLFSIKEFAIHELN 330
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 30.7 bits (66), Expect = 0.098
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 13 PEGLINLGNTCYMNATVQCL 72
P G IN GN C+MN+ +Q L
Sbjct: 132 PRGFINTGNICFMNSILQAL 151
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 28.3 bits (60), Expect = 0.52
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCLKTVPELKNALLNY 111
GL N GNTCY+++ + L + +++L +Y
Sbjct: 42 GLTNYGNTCYVSSVLVSLYHLKPFRDSLNSY 72
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 27.9 bits (59), Expect = 0.69
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCL 72
GL NLG TC+ N+T+Q L
Sbjct: 209 GLKNLGATCFFNSTLQVL 226
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCL 72
GL N G TCYMN+ +Q L
Sbjct: 231 GLKNQGATCYMNSLLQSL 248
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 312 DRDSTSAAAKATGPPNSSFRQK 377
D S AK PPN+SFRQ+
Sbjct: 11 DTASNGPVAKTRAPPNTSFRQQ 32
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCL 72
GL N G TCYMN+ +Q L
Sbjct: 214 GLKNQGATCYMNSLLQSL 231
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 19 GLINLGNTCYMNATVQCLKTVPELKN 96
G+ NLG TC+M+ +Q + P ++N
Sbjct: 146 GIQNLGATCFMSVILQSILHNPLVRN 171
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 303 GGVLLR*ASARGALGEARRCRV*STQ 226
GG+L + G G R+CR+ TQ
Sbjct: 77 GGILYMNSLGEGVSGSVRKCRIRGTQ 102
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 6.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 343 LPXPPIAPSDRNSVIEQYFG 402
LP P I+ D N ++++FG
Sbjct: 387 LPSPSISKKDENGSVKEWFG 406
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 24.2 bits (50), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 339 KATGPPNSSFRQKFSN*TVL 398
K GPP S F + F+N T++
Sbjct: 168 KPPGPPKSGFTRSFNNDTLM 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,606
Number of Sequences: 5004
Number of extensions: 16955
Number of successful extensions: 37
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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