Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H08
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.58 
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    27   2.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.1  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    25   7.1  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   7.1  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 350 LLLFTNCCAAVLCPSFEYMNTGRSTQCIFFHLSY*FILFKT 472
           LL+ + CC+  + PS   +NT  S  C+F + S+   LF T
Sbjct: 29  LLIPSLCCSLAVFPSIPLINT-HSNLCLFSNFSHSCFLFCT 68


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 408 ILVDLPSVFSFTFPIDSYFSKQFL 479
           +L  +P + S +F + SYF K+F+
Sbjct: 40  LLTKIPKIISSSFELPSYFEKKFV 63


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 149 YRELFVFSI*SVTTVKFTHVHGQNLWKKANVAKVDLNI 36
           YR +    +  VT  +  HV GQ+ W  AN+     +I
Sbjct: 391 YRIVMSCIVGDVTEKRALHVQGQSYWAPANIGPYSQSI 428


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 250 FGAIREKPLYTLNDFGITCYHYDLANFYSDDLTSTENYSC 131
           FGA   + + TL    +T      +N Y DD T  + +SC
Sbjct: 83  FGAGGPRLVNTLGGTFLTSPTAKRSNLYCDDFTGADYFSC 122


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 496 TFAAENRNCFEKYESIGKVKENTLGRSTSIHI 401
           +F  + + CF K +S+G  K +  G S  I +
Sbjct: 687 SFTFDQQLCFGKVDSVGDSKSSKFGESDRIDL 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,584
Number of Sequences: 5004
Number of extensions: 44941
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)