Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H08
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0008 - 30978448-30978593,30978673-30978733,30978822-309790...    30   1.0  
03_06_0006 + 30963331-30963457,30963751-30964715,30965166-309653...    30   1.0  
12_01_0524 - 4167867-4168445                                           28   4.1  
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    27   7.2  
02_04_0632 + 24614659-24615528,24615636-24616133                       27   7.2  
05_05_0126 + 22574191-22575567                                         27   9.5  

>03_06_0008 -
           30978448-30978593,30978673-30978733,30978822-30979007,
           30979458-30980422,30980716-30980842
          Length = 494

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 298 CIFTGHKVLSNLHNP 254
           C FTGHK L N+H P
Sbjct: 369 CTFTGHKTLENIHKP 383


>03_06_0006 +
           30963331-30963457,30963751-30964715,30965166-30965351,
           30965440-30965500,30965580-30965623
          Length = 460

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 298 CIFTGHKVLSNLHNP 254
           C FTGHK L N+H P
Sbjct: 369 CTFTGHKTLENIHKP 383


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 334 WVIWFSIIIYQLLCCCIVS 390
           W  W +   Y+L CCC  S
Sbjct: 66  WAFWIATCAYRLCCCCFSS 84


>03_02_0078 +
           5476288-5476626,5477474-5477670,5477750-5477885,
           5478055-5478132,5478227-5478280,5478466-5478650,
           5478781-5480374,5480506-5480700,5480753-5480904,
           5481213-5481486,5481597-5481733,5482219-5482258,
           5482773-5483261,5483605-5484168
          Length = 1477

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 396 NEGHNTAAQQLVNNNRKPDDP*F*LSSKNLRMDAYL 289
           N GH++  + L NN   PD P        LR   +L
Sbjct: 423 NRGHDSVVEGLANNEEPPDFPEHLFEGNGLRSSLHL 458


>02_04_0632 + 24614659-24615528,24615636-24616133
          Length = 455

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 334 WVIWFSI-IIYQLLCCCIVSF 393
           WV+W  + ++  ++CCC V F
Sbjct: 324 WVVWNQVFLLVDVICCCAVFF 344


>05_05_0126 + 22574191-22575567
          Length = 458

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 325 LKLWVIWFSIIIY-QLLCCCIVSF 393
           L+ WV W  I+++  + CCC V F
Sbjct: 324 LQGWVTWNQILLFVDVACCCAVLF 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,017
Number of Sequences: 37544
Number of extensions: 229399
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)