Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H08
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56284| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)                 29   3.2  
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_56284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 349 SIIIYQLLCCCIVSFV*IYEYW*IYPVYFLSPFLL 453
           S+++Y +   C   F   + YW +   YFLSP L+
Sbjct: 238 SLVVYFVFVACSTPFACAFAYWEVTQNYFLSPILV 272


>SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
          Length = 367

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 315 YCSVKTMGHLVFYYYLPIVVLLYCVLRLN 401
           Y    T+G  +F+Y LP+V++ Y  ++++
Sbjct: 197 YMKAYTIGLAIFWYLLPLVIITYTYIQIS 225


>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 691

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 36  DVKVYLCYICFFPQILSMNMCELNCS 113
           D+++YL   C+  ++L ++ CEL+ S
Sbjct: 349 DIELYLLEACYNLKVLDLHKCELSAS 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,461
Number of Sequences: 59808
Number of extensions: 297449
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)