Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H08
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 384 CVLRLNI*ILVDLPSVFSFTFPIDSYFSK 470
           CVL   + I++  PS++  T PID  +SK
Sbjct: 558 CVLG-TVLIILQAPSLYDTTKPIDIKYSK 585


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 241 IREKPLYTLNDFGITCYHYDLANFYSDDLTSTE 143
           +  K +Y + D G+  Y++ L   +   L S E
Sbjct: 216 LENKLIYFIEDIGLNTYYFFLRQAFPFWLPSKE 248


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 42   KVYLCYICFFP 74
            ++Y CY+C+ P
Sbjct: 1064 RLYDCYVCYSP 1074


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,579
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)