Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H08
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina...    28   3.4  
At5g18520.1 68418.m02187 expressed protein                             27   7.9  
At3g09570.1 68416.m01137 expressed protein                             27   7.9  

>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to phosphatidylinositol
           3,5-kinase [Candida albicans] GI:14571648; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1648

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 368 CCAAVLCPSFEYMNTGRSTQCIFF 439
           C  AVLCPS + ++T R   C  F
Sbjct: 504 CTGAVLCPSLDSISTARLGHCELF 527


>At5g18520.1 68418.m02187 expressed protein
          Length = 440

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 325 LKLWVIWFSI-IIYQLLCCCIVSF 393
           +K WV W  + ++  ++CCC + F
Sbjct: 306 IKDWVTWNQVFLLVDIICCCAIIF 329


>At3g09570.1 68416.m01137 expressed protein
          Length = 439

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 325 LKLWVIWFSI-IIYQLLCCCIVSF 393
           +K WV W  I ++  ++CCC + F
Sbjct: 305 IKDWVTWNQIFLLVDIVCCCAILF 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,353
Number of Sequences: 28952
Number of extensions: 212026
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)